Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03790 ATGATAATGATTCTCTGCATTGCTGTCTTTCCTCCCGACTGTACCATCATTATCATTTCATTTTGTCTCCATTTGCCTTCTAGCTTTTGGACACTTAAATACTGGATAACTAGGAAGTTGGAAGCAAATGGCTCGGATCATACAAGAAATGAGGATGTTCTATCTCGTCTTCTGGGGAACCTGGCAAGTCAGGCTGGTACTATTAATGGAAGAAATATGGCATCTTTATTGGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGATCTGCACAGAATGTTCAAAACACAGATTCAAATTCAAATGGTCCTGGACCATCCAGACCTTTCGGTTCTTCTATCAAGATGGGTAATGGTAAAATCCATCAGGACTCTCTGGATTCTAGGTTACAGTGTGAGATGGTTCATGCAAATGATATGACACAAAAATGTACACCTTCAGGCAGTGGTGGTGTTGGAAGTTCAAAACCTCCTTTGGGACCACAGTCCTCAAATGTACTTCTGTCAAGGGGTAGCCCTCCACCCCAATCAGTTGCAGCTGAGACTACAGTTGGAAGAAATGGCTTAAGTGATATTGACCTGAATAATGTATATGATGATGTGCAGGATTATGTTGAGAACCCCAGGAATTCTCATCCTCCTGTGGCTTCAGGGATTGGGCCTCTTGATCATCCTTCATGGGTACAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCTCTTGTTCTTCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGCTGTATCATATTAACTATATATCTCCGCCTAGAAAATTCTGCATGGGAGGAGCTATGCTATAATCTAGGGTCCAGCTTGAGAAAGCTTCTTGCTGCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATACACAAGGGTGCGACACTCTGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTGCCATTGCGCCTCAAAAGCCCACAAAATTGTCAGATTTTGTGCATTACACCACTTGCTGTTTCTGCAAGTGCAAGTGCAAAATTTATTGTGAAAGGATTCAACCTTTCCCTGTCTAGCACAAGGTTGCTCTGTGCTCTTGAAGGGAAGTATCTGGTACAGGATAATTGTTATGATTTGATTGATGGTGCTGATGCAGCCATTGGATATCATGAGCTTCAGCATCTCAGCTTCTCTTGTCACATACCAAATATGACTGGAAGAGGGTTTATTGAGGTAGAAGATATTGGTCTTAGCAGCTGTTCCTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAAATATGTAAGCTGGAGAATGTCATTGAGGCAGCAGAGACTACTGATGACATCCAGATAAAAACCAAACTAATGGAAGAAAAAACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCAATGGCACCTGTCCAAGATCGCTTCCATTTTAATCGGTTCACATGGCTTGTTGGCTTCTCTGTGGACCATGATTGGTGTGCTGTGATGAAAAAACTGTTAGATATTATCTTTGATGGTGCTGTTGATACAGGAGAGCATTCCTCCATTAAGCTTGCATTATTAGACATGGATCTTCTACACACAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAACTACTGTTGAACTTTGTGCCAGTTAAAGCCTCAGATGGTGAAGACACTAAAGAGAAGCAAGTCAACAAGTCCCCTGACATATTCTTGTTTAGACCTGATACCGTTGGGCCTGCTGGGTTGACACCCCTTCATGTTGCAGCAAGTACAAATGGCTCTGAGAATGTATTGGATGCATTAACTGATGATCCAGGAATGGTGGGAACTGAGGCATGGAAAAGTGTCAAGGACAACACAGGTTTGACACCCTATGACTATGCATCCCTGAGGGGCTACTACTCCTACATTCAACTTGTTCAAAGGAAAACAAGCAAGAAATGTGAAAGCCAACATGTGCTTGATATCCCAAGCACCCTTGTAGACAGTAACATAAAGCAGAAGCAATCAGATGGGCACAGGTCATCAAAAGTTTCAAGTTTGCAGACTGAAATAACAGCAATGCCACACCAATGTGGGCTCTGCCAACACAAGCTGGCATACGGTGGCGTGAGAAGGCCACTGGTTTATAGGCCGGCAATGCTGTCAATGGTTGCCATTGCAGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCAAAAGTTTCTTATGTATTCCAGCCCTTCAACTGGGAATCATTAGAGTATGGGTCAATCTAA 2457 0.429 MIMILCIAVFPPDCTIIIISFCLHLPSSFWTLKYWITRKLEANGSDHTRNEDVLSRLLGNLASQAGTINGRNMASLLEGSQDLVKAGTSGSAQNVQNTDSNSNGPGPSRPFGSSIKMGNGKIHQDSLDSRLQCEMVHANDMTQKCTPSGSGGVGSSKPPLGPQSSNVLLSRGSPPPQSVAAETTVGRNGLSDIDLNNVYDDVQDYVENPRNSHPPVASGIGPLDHPSWVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCYNLGSSLRKLLAASNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLRLKSPQNCQILCITPLAVSASASAKFIVKGFNLSLSSTRLLCALEGKYLVQDNCYDLIDGADAAIGYHELQHLSFSCHIPNMTGRGFIEVEDIGLSSCSFPFIVAEQEICSEICKLENVIEAAETTDDIQIKTKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPMAPVQDRFHFNRFTWLVGFSVDHDWCAVMKKLLDIIFDGAVDTGEHSSIKLALLDMDLLHTAVKRNCRPMVELLLNFVPVKASDGEDTKEKQVNKSPDIFLFRPDTVGPAGLTPLHVAASTNGSENVLDALTDDPGMVGTEAWKSVKDNTGLTPYDYASLRGYYSYIQLVQRKTSKKCESQHVLDIPSTLVDSNIKQKQSDGHRSSKVSSLQTEITAMPHQCGLCQHKLAYGGVRRPLVYRPAMLSMVAIAAVCVCVALLFKSSPKVSYVFQPFNWESLEYGSI. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03790 818 MobiDBLite consensus disorder prediction 87 124 - -
Seca5g03790 818 MobiDBLite consensus disorder prediction 142 194 - -
Seca5g03790 818 MobiDBLite consensus disorder prediction 230 262 - -
Seca5g03790 818 SUPERFAMILY Ankyrin repeat 590 704 IPR036770 -
Seca5g03790 818 Gene3D - 572 720 IPR036770 -
Seca5g03790 818 MobiDBLite consensus disorder prediction 228 262 - -
Seca5g03790 818 MobiDBLite consensus disorder prediction 142 191 - -
Seca5g03790 818 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 103 635 IPR044817 GO:0003677
Seca5g03790 818 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03790 Seca-Chr5 94977378 94984984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03790 117 817 SBP-box Gene Family AT2G47070 49.233 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03790 - - gmx:100776125 1257.66