Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03780 ATGGAACAGTTGAAATTGGCTGCACATTCTGACGCCAAAGAGGATTCTCCTTTTAGGCACAAGCCAAAAAACAACAATGCGCTCGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTAGATGGGTTCCAGATGAAGCATGTCGGCCTATAATTGATGAAGCACCTGTGTTTTATCCGACTATTGAAGAGTTTGAAGACACACTTGGTTACATAGCAAGGATACGCCCCCAAGCTGAACCTCATGGCATATGTAGGATTGTCCCTCCACCTAGCTGGGTTCCACCCTGCCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAGAGTAGAGGAAGGAAACGAAAACGTAGAAAGAACTCCAAATTGGGCACATGTAGGAGACTTGCCAATTCAGCTTCTGAGGCTAATAATGCTTCTGAATCTGATGAGAAATTTGGATTCCAATCAGGGTCGGATTTCACACTTCAAGACTTCCAGCAATATGCTAACTTTTTTAAGGAATGTTACTTTGGGTTGAAAGATGCCAATGAAGATGGAAAAGTTGGTGATAGTGACCACAAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGAACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTAACTAAGAGTGATTTGGATCAGTATGCCCTGTCTGGCTGGAATCTGAATAACTTCCCGCGATTGCCAGGTTCTGTGCTAAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTAGTGCCATGGCTTTATGTTGGCATGTGCTTTTCTTCGTTTTGCTGGCATGTTGAGGATCATCATCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAATACCGGGAAGCCATGCTTCAGCTTTTGAAAATGCAATGAGGAAGCACTTGCCAGATTTATTTGAAGAACAACCAAATCTACTCAATGAACTGGTTACTCAATTATCTCCTTCAATTCTTAAATCTGAGGGAGTGCCTGTGTATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTCGAGGTTTATAGTTTACAATGCCGGAAGACATCATTGTCACATGACAAGCTGTTATTTGGGTCAGCACTGGAAGCTGTACGAGCCCTTGCAGATCTATCTCTTTTAGGAAAGGAAACTACAAAAAATTTGAAATGGAGAAGTGTTTGTGGGAAAGATGGAGTTCTTACTAAGGCAGTTAAGACAAGGATAAAGTTAGAAGAAGAGAGGCTAGACCATCTTCCAACTTGTTTTAAGTTGCTGAAGATGGATAATGACTTCGATTTGTGCACGGAGAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTAGGTTGTGAGTGCTCTCCTGACAAATTTTCTTGTCTTAAACATGCTAACTCGTTCTGCTCGTGCAAAATGGATAAAAGATTTGTTCTGCTTCGATATACTATAAATGAGCTAAATAAATTGCTCGAAGCATTAGAAGGAGAATCCGCTGCTATTGAGGTGTGGGCAAATAAAAACTTTGGATTGGTTTCTGCCGATGTCAATGAGGTGTGCATAGATAAACCAGATGTCAAGAGAGGCATGTACAAAACCAAGGGTATTGAAGAAGGGGAAACCTGGACTGGTTGTGCAGGAACCAAGGATAGGTCAAATTTAAATGCAACTAGCAGTCCTTATAGTCATGTTACGTCAGAGTTAGTGCAGTCTGAGTCTCACCTTGCAACTTTTAGTGCATCATATGGAAGTATAGATAGTCATAAAAACAACAATAATGATAATAAGATGGCCATAGGCAATGGAGAAAAGGTGGATCAGGCAGGTTCTCTGGATTTGAATCTTGATGTTACATCTGGTGAAAATGAAAATTGTGTTGCTGATAACCATCATATGAAGGGTGTTCCAGCTGAAAAAAAAGAATGCTATTCAGAGGCCAGAAAGGAACAAGACAACGTGGATTTTTCATTATGTTCAAGGGATGTTTGCAATTCTTGTACATTTGGTGGTGGAAAATATGAGGTGGATTTGCAAATGGATTCAGATTCAAGAAAGCAACTCAGCTTTTTATTTAAAGAGGAAGTCATAGACACCACAAATACAAGTATATCTTTGACATGCACACAGGAAAGTTACCTAATGCAAATATTTGGTACTTCTGTTAAGCCTATAAGTTTGGGATCTGTTGTTTATGGAAAGCTGTGGTGCAGTAAGCACTCAATATATCCAAAAGGATTCAAGAGTCGAGTTAAGTTCTTTAGCATTCTTGATCCAACAAGAATCTGTAGCTATATTTCTGAAGTCGTTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTACCATGGAAGATTGTCCAAGTGAGGCTTTTACAGATACCTCAGCAGAGAAGTGTTGGGAATCAGTTCTAAAGAGACTAAATCATGAAATCATGAGGCGGGGGAATCTAGGTGAACTAGAACTTCCTCCGTTAGAGTTTCTGAAAAGCATTAACGGTCTTAGAATGTTTGGCTTTCTTTTACCATCCATTATTCAGGCCATGGAAGCTCAAGATCCCAGTCATCAGTGTGTAGAGTACTGGAATCACAAAGTTGTCCCCACATCTTCAGGCAGTGTCATTAGTGACTTTAAGGTCACTAATGGTTCAAGTAGCTCTTTAGATAATGTCGACACCAAAGGTTTTGATAACAATTTGATTGAGCAGGCAAAGGATAACATGGGAGGAAGCTGTCGTTCCCTCGAAGAGATGAAACCAATACTAGAAAGGGCAAGTTTGGATGAGTTAAGCACAATGCTTAAGTTACATAGCTCTGATGCACAGTGCTCTCAGTGGAGAATGGCATTGCTATCTCTGATGGATGAGATCCAGAAAGCTTGTAGATAA 3129 0.4091 MEQLKLAAHSDAKEDSPFRHKPKNNNALESSDSLRNRKISARWVPDEACRPIIDEAPVFYPTIEEFEDTLGYIARIRPQAEPHGICRIVPPPSWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKNSKLGTCRRLANSASEANNASESDEKFGFQSGSDFTLQDFQQYANFFKECYFGLKDANEDGKVGDSDHKKRWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGELGSGFPKASSLTKSDLDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHASAFENAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVEVYSLQCRKTSLSHDKLLFGSALEAVRALADLSLLGKETTKNLKWRSVCGKDGVLTKAVKTRIKLEEERLDHLPTCFKLLKMDNDFDLCTERECFSCFYDLHLSAVGCECSPDKFSCLKHANSFCSCKMDKRFVLLRYTINELNKLLEALEGESAAIEVWANKNFGLVSADVNEVCIDKPDVKRGMYKTKGIEEGETWTGCAGTKDRSNLNATSSPYSHVTSELVQSESHLATFSASYGSIDSHKNNNNDNKMAIGNGEKVDQAGSLDLNLDVTSGENENCVADNHHMKGVPAEKKECYSEARKEQDNVDFSLCSRDVCNSCTFGGGKYEVDLQMDSDSRKQLSFLFKEEVIDTTNTSISLTCTQESYLMQIFGTSVKPISLGSVVYGKLWCSKHSIYPKGFKSRVKFFSILDPTRICSYISEVVDAGFLGPLFKVTMEDCPSEAFTDTSAEKCWESVLKRLNHEIMRRGNLGELELPPLEFLKSINGLRMFGFLLPSIIQAMEAQDPSHQCVEYWNHKVVPTSSGSVISDFKVTNGSSSSLDNVDTKGFDNNLIEQAKDNMGGSCRSLEEMKPILERASLDELSTMLKLHSSDAQCSQWRMALLSLMDEIQKACR. 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03780 1042 FunFam Putative lysine-specific demethylase JMJ16 801 939 - -
Seca5g03780 1042 SMART fyrn_3 809 853 IPR003888 GO:0005634
Seca5g03780 1042 Gene3D - 800 939 - -
Seca5g03780 1042 ProSiteProfiles FYR domain FYRN motif profile. 795 853 IPR003888 GO:0005634
Seca5g03780 1042 Pfam jmjN domain 57 90 IPR003349 -
Seca5g03780 1042 Pfam F/Y rich C-terminus 857 944 IPR003889 GO:0005634
Seca5g03780 1042 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Seca5g03780 1042 SMART JmjN_1 55 96 IPR003349 -
Seca5g03780 1042 SMART cupin_9 264 430 IPR003347 -
Seca5g03780 1042 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 762 - -
Seca5g03780 1042 MobiDBLite consensus disorder prediction 1 26 - -
Seca5g03780 1042 MobiDBLite consensus disorder prediction 120 166 - -
Seca5g03780 1042 MobiDBLite consensus disorder prediction 146 166 - -
Seca5g03780 1042 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Seca5g03780 1042 MobiDBLite consensus disorder prediction 1 33 - -
Seca5g03780 1042 ProSiteProfiles FYR domain FYRC motif profile. 855 945 IPR003889 GO:0005634
Seca5g03780 1042 SMART fyrc_3 859 951 IPR003889 GO:0005634
Seca5g03780 1042 SUPERFAMILY Clavaminate synthase-like 265 450 - -
Seca5g03780 1042 MobiDBLite consensus disorder prediction 128 145 - -
Seca5g03780 1042 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Seca5g03780 1042 Pfam F/Y-rich N-terminus 806 850 IPR003888 GO:0005634
Seca5g03780 1042 Gene3D Cupin 41 414 - -
Seca5g03780 1042 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03780 Seca-Chr5 94880565 94890141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03780 751 977 JUMONJI Transcription Factor Family AT1G30810 45.815 4.41e-52 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca5g03780 JmjC 1.4e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03780 K11446 - gmx:100801775 1608.58