Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03768 ATGGCAGGTTCTAATAGATCATCTTCTCTGAAAGATACTCAGCGATCAATTCCTGTTGGAACTCTAGCTGCAACTCTTGTAACTTCTTTTATGTATCTTATTTCTGTGATAATGTTTGGTGCTGTTGCCACCCGAGACAAGCTTTTAACTGACAGGCTACTTACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACTATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCTCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTATTTTGAACTACTTTAAAGTTGCAGATGGCAGTGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTGATTATTGGGAATCTGGATCTTATCACTCCAACTGTGACTATGTTTTTCCTTCTCTGTTATGCTGGGGTCAACTTATCGTGCTTCCTTCTCGATCTTCTAGATGCCCCTAGTTGGCGTCCTCGGTGGAAATTTCACCATTGGAGTCTATCGCTTGTGGGAGCATTACTTTGCATAGTGATCATGTTCCTAATCTCTTGGTCATTCACTGTGGTGGCTTTGGCCCTTGCAAGCCTTATATATAAGTACGTGAGCATAAAAGGAAAGGCTGGGGACTGGGGAGACGGTTTCAAAAGTGCCTATTTCCAACTAGCACTTCGTAGCCTTCGGTCATTAGGAGCAAGTCAAGTGCACCCAAAGAATTGGTATCCAATTCCCTTAGTATTTTGCCGACCCTGGGGCAGACTGCCAGAAAATGTTCCCTGTCATCCCAAACTTGCAGACTTTGCTAATTGTATGAAGAAGAAAGGTCGAGGAATGTCCATATTTGTCTCTATATTAGATGGGGATTACCATGAATGTGCTGAAGATGCCAAGGCTGCTTGTAAACAACTTAGTACCTACATTGATTACAAGAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCTAACATGTCTGAAGGCTTTCGTGGCATCGTTCAGACAATGGGCCTTGGCAATCTCAAACCGAACATTGTTGTGATGCGATACCCAGAAATCTGGCGTCGGGAGAACTTAACAGAAATTCCTGCCACCTTTGTTGGGATAATTAATGATTGCATTGTTGCAAACAAGGCAGTAGTTATAGTTAAGGGTCTTGATGAATGGCCAAATGAGTACCAGAAGCAGTATGGTACAATTGATTTGTATTGGATTGTAAGAGATGGTGGTCTCATGCTACTGCTCTCTCAATTGCTTCTTACAAAAGAGAGCTTTGAGAGTTGCAAGATTCAAGTTTTCTGTATTGCGGAAGAGGATGCAGATGCAGAGGGGCTGAAAGCTGATGTGAAAAAATTCCTTTATGATCTTCGGATGCAAGCAGAAGTCTTTGTCATAACAATGAAATGGGATGCACAAATGGATGGCGAGTCTCCGCAAGATGAGTCATTCGAAGCATTTACTAATGCTAAACAAAGAATTGTTGATTATTTAACCGAAATGAAGGCAACATCAGAGAGAGAAGGTACCCCTCTAATGGCGGATGGTAAGGCTGTAGTTGTGAACGAGAAGCAGGTTGAGAAATTTCTATACACTACCCTTAAGCTCAATTCAATAATTTTGAGATATTCAAGAATGGCTGCTGTTGTGTTAGTAAGTCTGCCTCCACCTCCATTAAACCACCCAGGTTATTTCTATATGGAGTACATGGATCTGTTGCTGGAAAATGTACCAAGGATTTTGATTGTAAGAGGATACCGTAGAGACGTTGTAACTCTATTCACATAG 1806 0.4197 MAGSNRSSSLKDTQRSIPVGTLAATLVTSFMYLISVIMFGAVATRDKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLVGALLCIVIMFLISWSFTVVALALASLIYKYVSIKGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLVFCRPWGRLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKAACKQLSTYIDYKNCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDADAEGLKADVKKFLYDLRMQAEVFVITMKWDAQMDGESPQDESFEAFTNAKQRIVDYLTEMKATSEREGTPLMADGKAVVVNEKQVEKFLYTTLKLNSIILRYSRMAAVVLVSLPPPPLNHPGYFYMEYMDLLLENVPRILIVRGYRRDVVTLFT. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03768 601 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 1 598 IPR004842 GO:0006811|GO:0015377|GO:0016020
Seca5g03768 601 Pfam Solute carrier family 12 270 391 IPR018491 GO:0006811|GO:0016020|GO:0022857
Seca5g03768 601 Pfam Solute carrier family 12 402 600 IPR018491 GO:0006811|GO:0016020|GO:0022857
Seca5g03768 601 Gene3D Amino acid/polyamine transporter I 1 218 - -
Seca5g03768 601 Pfam Amino acid permease 2 244 IPR004841 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03768 Seca-Chr5 94681695 94689827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03768 1 601 Inorganic Solute Cotransporters AT1G30450 86.235 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03768 K14427 - pvu:PHAVU_009G216800g 1101.66