LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03764	ATGGGTTTTTGGGCTACAGTATCTGTTATGACTAATCAATTTATTCCATTTTCTGCCACTATTACTGAATCTGCCATGAGGTCCAAATTGGGCGCCGGTTTCCCAAAAATACACTTAAATACAAACAAAGGAAAATTCAGTCTCTCTTTTGCTAGGGACTATTATGAAGTTGGGAGTAATGGTGCAACCAAATCAAGCCGAGAAGTATCTTATTTGCCAACCCGACAAGAACGAGGAACTTGGGAAGAACCAGATATTGACAGTGGCAGTGACAGTGAGTATGATGATGAAGAAGATGAGGAAGTTGAAGATGAGAACCTTGGATTTGAAAGTGACTGGGAAGAGGAGCAGACCAAGACTTCAGATATTACTGATGTTAATATAACTTCAAGAGGCAAGTATGAGATTGAGGAGAGTATTATTAAGAACGAGGTTGAACAGCTTTTGGAACCCGAAGAAAGAGCAATATTGCAACAGAACGTAACTCCTAACTTGGAAAAAATATCATCTGCAAAATGGAGCCCACTGCACTCTCTTGCACTATCAATGCAGATAAGTTGCATGGATAAGCTTCTTGAAAATGGTTTTGATATTGATTCCCTTAATAAGGAAGGTCTCACTGCACTTCATAAAGCAATTATAGGTAAAAAGGAAGCTGTAATAAGCCACCTTTTACGGAATGGTGCAAGTCCACATGTTAAGGATAAGGATGGAGCTACTCCTCTTCATTATGCAGTTCAAGTTGGTGCCAAGCAAACTGTGAAATTATTGATCAAGTACAAGGTTGATGTCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCATTCAAAGCAGAAATAGAGATATAGTGAAAATTTTGTTAGTCAATGGTGCAGATAAGACAAGAAAAAATAAGATTTTTCAATCCTTTTGGGCTATATTGCTGTTGTCCATTGGAACTAATAAATAA	960	0.3812	MGFWATVSVMTNQFIPFSATITESAMRSKLGAGFPKIHLNTNKGKFSLSFARDYYEVGSNGATKSSREVSYLPTRQERGTWEEPDIDSGSDSEYDDEEDEEVEDENLGFESDWEEEQTKTSDITDVNITSRGKYEIEESIIKNEVEQLLEPEERAILQQNVTPNLEKISSAKWSPLHSLALSMQISCMDKLLENGFDIDSLNKEGLTALHKAIIGKKEAVISHLLRNGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYKVDVNVADNEGWTPLHVAIQSRNRDIVKILLVNGADKTRKNKIFQSFWAILLLSIGTNK.	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat region circular profile.	237	269	-	-
	Seca5g03764	319	Gene3D	-	138	240	IPR036770	-
	Seca5g03764	319	PRINTS	Ankyrin repeat signature	286	300	IPR002110	GO:0005515
	Seca5g03764	319	PRINTS	Ankyrin repeat signature	238	253	IPR002110	GO:0005515
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat profile.	237	269	IPR002110	GO:0005515
	Seca5g03764	319	PANTHER	ANKYRIN REPEAT FAMILY PROTEIN	143	302	-	-
	Seca5g03764	319	MobiDBLite	consensus disorder prediction	65	120	-	-
	Seca5g03764	319	Pfam	Ankyrin repeats (3 copies)	220	301	IPR002110	GO:0005515
	Seca5g03764	319	Gene3D	-	241	312	IPR036770	-
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat region circular profile.	204	236	-	-
	Seca5g03764	319	SUPERFAMILY	Ankyrin repeat	169	301	IPR036770	-
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat region circular profile.	270	296	-	-
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat profile.	270	302	IPR002110	GO:0005515
	Seca5g03764	319	MobiDBLite	consensus disorder prediction	86	111	-	-
	Seca5g03764	319	SMART	ANK_2a	204	233	IPR002110	GO:0005515
	Seca5g03764	319	SMART	ANK_2a	270	299	IPR002110	GO:0005515
	Seca5g03764	319	SMART	ANK_2a	237	266	IPR002110	GO:0005515
	Seca5g03764	319	SMART	ANK_2a	171	200	IPR002110	GO:0005515
	Seca5g03764	319	ProSiteProfiles	Ankyrin repeat profile.	204	236	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03764	Seca-Chr5	94644409	94649669	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g03764	156	302	Ion Channels	AT2G25600	26.966	1.12e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03764	-		-	lja:Lj0g3v0067589.2	453.366