Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03749 ATGGCTGTGCCTTTGCTGACCAAGAAGATCGTGAAGAAGAGGGTCAAGCAGTTCAAGCGCCCTCAGAGCGATCGTAAGATCTCCGTCAAGGTCAGTACTCCCTTTTATTCTGCACCATTATTCTCTTTTATAGTTTACTTTTTATTTATTGTTTTATTCAGATTTCTTCATTACATTTTAGTTGAAACAAACTGGCGCAGACCCAAGGGTATTGATTCCCGTGTTAGGAGGAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGTTCAGACAAGAAAACTCGCCATTACCTACCAAATGGTTTCAAGAAGTTTGTTGTTCACAATGTGAAAGACCTTGAACTTCTCATGATGCATAACAGGACATACTGTGCTGAGATTGCTCACAATGTATCCACAAGGAAGAGGAAGGAAATAGTTGAAAGAGCTGCCCAGCTTGATGTTGTTGTGACAAACAAAACAGCCAGACTCCGCAGCCAGGAGGATGAATAG 498 0.4177 MAVPLLTKKIVKKRVKQFKRPQSDRKISVKVSTPFYSAPLFSFIVYFLFIVLFRFLHYILVETNWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKTARLRSQEDE. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03749 165 CDD Ribosomal_L32_L32e 16 154 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03749 165 Pfam Ribosomal protein L32 57 154 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03749 165 SUPERFAMILY Ribosomal protein L32e 57 163 IPR036351 -
Seca5g03749 165 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 165 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03749 165 SMART Ribosomal_L32e_2 52 154 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03749 Seca-Chr5 94469690 94471977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03749 1 165 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 69.697 4.02e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03749 K02912 - gmx:100787561 239.965