Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03748 ATGGCGGTTCCCTTGCTTTCAAAGAAGATCGTGAAGAAGAGGGTGAAGAAGTTCAAGCGCCCTCAGAGCGATCGTAAGATCTCCGTCAAGCCAAACTGGCGCAGACCCAAGGGTATTGATTCTCGTGTCAGGAGAAAGTTCAAAGGATGCACTTTGATGCCCAACATTGGTTATGGTTCAGACAAGAAAACTCGCCATTACCTACCAAATGGTTTCAAGAAGTTTGTTGTTCACAATGTGAAAGACCTTGAACTTCTCATGATGCATAACAGAACATACTGTGCTGAGATTGCTCACAATGTATCCACAAGGAAGAGGAAGGATATAGTTGAGAGAGCTGCCCAGCTTGATGTTGTTGTGACAAACAAAACAGCCAGATTACGCAGCCAGGAGGATGAATAG 402 0.4478 MAVPLLSKKIVKKRVKKFKRPQSDRKISVKPNWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVVTNKTARLRSQEDE. 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03748 133 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 133 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03748 133 SMART Ribosomal_L32e_2 15 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03748 133 Pfam Ribosomal protein L32 16 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03748 133 CDD Ribosomal_L32_L32e 22 122 IPR001515 GO:0003735|GO:0005840|GO:0006412
Seca5g03748 133 SUPERFAMILY Ribosomal protein L32e 2 131 IPR036351 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03748 Seca-Chr5 94463769 94465596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03748 1 133 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 85.714 9.94e-85 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03748 K02912 - gmx:100787561 256.529