Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03741 ATGGGTCGTCCAAAGTTAACCTTAAAATGCATCCCAAATGAGAGAGAACGGAACTTAGCTTTCATGAAGAGAAAGAAGGGACTATTGAAGAAAATGTCTGAATTTTCTTCCATGTGTGGAGTTGATGCTTGCTTGATTATCTATTATGGCAATGGTCATGCCCCAACTGTGACTTGGCCTCAAGACCCTGCTGAATTGTACTCCATCATTCAGAAGTATGAGCATGCAAAGATTGAGAAACCTCCTAAGAATTTTGATCTTCAAGACTTTTTCCAAATTAGGAAGAATTCTGTTGAATCTGAGACCTCCAAAGTGAGAAAAGGGATCCTCAAGATTGAATATCCAACTTGGCATCCAAGTCTCCATAGCCTAGGAGTAGGGGAGCTGAGGAATTTCATTGCTGTGTTGGATGCTAAGCTTGAAGCTTGTAATCTTAGAATTAACATGTTGAAGAACAAGCATCCAATTGAAGAAGCCAACTTCATTTTCATGCCCAACATCTCTCAAAGCCAACATCTCATTGATCCTCTGAAGCCACTCAATGATGGTACTAATCAGCTTGGAAATTCAATAAATCAACTTAATGTGCCAATGTTGATGCCAAAGAATAATGGGATAGTAGATATTACCAATCAAGTTGATTTGCCTGTGGATTGTTCAAACCAAATTGTTGCCTTTGGAAATTCAACAAATCAAATTGATGGGCCAGTGCTGATGGTAAATAATGATATGGTGAATATTACTGATCTTGTTGATTTTCCTGTGGATTGTGCAAGCCTAATTGTTGCCTTTGGAAATTCAACGAATCAAATTGATGGGCAAGTGTGGATGGCAAATAATGATGGGATGGTGGATACTACTAATCATGTTGATGTGCCTGTTAACTATAGAAATCAAATTGGTGCTCTTGGAAATTCAACTAATCAACTTGATGTGTCAGAAGATTGGGCTAGTCAACTGAGTGAGATTGTGGATTGGACTGATCCAGCTAATTGGACTAATCAACTCGGTGTGCCTAGTGATACAATAATGAATGGATCTTCTAATTATGGGACAAATTTTCATGTGTTAGAAAAGGATGGAAAACCAGACTCCTCCTCAATTTGCAATTACAATGTAGGTCAGCAATTTATGCAGCCTTATAACTTTGATCCTACATTGCAGAATATTGGTTGTCAATCTGAGAATGTGCAGCAAGAAGCAGCTCTGTATACCCTGCCATCACTGGTGGATGAATTTCTCACAGATGACTACAACAATAAGCTTCAAGATCAGTTCTTCAACCACATCAATTAG 1296 0.385 MGRPKLTLKCIPNERERNLAFMKRKKGLLKKMSEFSSMCGVDACLIIYYGNGHAPTVTWPQDPAELYSIIQKYEHAKIEKPPKNFDLQDFFQIRKNSVESETSKVRKGILKIEYPTWHPSLHSLGVGELRNFIAVLDAKLEACNLRINMLKNKHPIEEANFIFMPNISQSQHLIDPLKPLNDGTNQLGNSINQLNVPMLMPKNNGIVDITNQVDLPVDCSNQIVAFGNSTNQIDGPVLMVNNDMVNITDLVDFPVDCASLIVAFGNSTNQIDGQVWMANNDGMVDTTNHVDVPVNYRNQIGALGNSTNQLDVSEDWASQLSEIVDWTDPANWTNQLGVPSDTIMNGSSNYGTNFHVLEKDGKPDSSSICNYNVGQQFMQPYNFDPTLQNIGCQSENVQQEAALYTLPSLVDEFLTDDYNNKLQDQFFNHIN. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03741 431 Coils Coil 133 153 - -
Seca5g03741 431 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Seca5g03741 431 CDD MADS_SRF_like 2 80 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca5g03741 431 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Seca5g03741 431 PANTHER MADS BOX PROTEIN 3 117 - -
Seca5g03741 431 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03741 Seca-Chr5 94403379 94404674 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03741 1 144 Type I MADS-box Gene Family AT5G55690 33.553 9.97e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g03741 SRF-TF 3.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03741 - - ccaj:109791338 301.982