Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03738 ATGGGTCGTGCAAGAGTAACTTTGAAGCACATCCAAAATGAGAGAGCTCGCAAAATAGCTTTCATGCAGAGAAGAAAAGGACTAATGAAAAAAGTATCCGATTTTTCTACCATGAGTGGAGCTGATGCATGCTTGATAGTGTATGATGGTGATAGTAATGGTGGACCAATGACTTGGCCCCAAGACCTCACAAAAGTACACTCCACCCTTGTAAAGTATGAGACTCAAAAGAATGAGAAGCCTCTTAAGACATTTGATCTCCAAGACTTCTTTGACAATAGGAAGGACATGGTGGAAACTGAAATATCCAAAGTGAAGAAAGAGATTATCAATGTCATGTATCCAACTTGGAATACAAATTTCAATAACCTAGGAGAGAAGGAGCAGAGGATGTTCATTGCTACTTTGGATGATAAAATTGAAGCTTGTAATCAAAGGATTACCATGTTGAAGAACAAGCAACAACAAAATCAAGAAGCCAACTCTGGTTTCTTGCAGAACATGGCTCAAGAGATTGCTAGCTCCTCAGGTCCAAGCCAACTCAATTTCATACAGAACATCTCTCAAAGCCAACTTCAACTCACCCCTGCTCCTGTGAAGGCACCTTATGATAATAATGAGATGGTGAATTTCACTAATCATGTTGGTGTGCCTCTGAATTCAACAAACCAGCTTGTTGAGCCTATTGATTGGGCTAATCCATTGAGTGAGCCTGTGGATTGGGCTAATTACTTTGGTGATGATCTTTTGGGGTCATTGGGGTGGGCCACTCAACTTGATGATCCAGTTTTGCATAATAATATTCCTTCTCAGTGTCACAATGAGCAGCAAGGAGCATCTTTATTTGCCTTGCCACCACCATTGGATGGACACATGAATAAGAAACCATAG 891 0.4074 MGRARVTLKHIQNERARKIAFMQRRKGLMKKVSDFSTMSGADACLIVYDGDSNGGPMTWPQDLTKVHSTLVKYETQKNEKPLKTFDLQDFFDNRKDMVETEISKVKKEIINVMYPTWNTNFNNLGEKEQRMFIATLDDKIEACNQRITMLKNKQQQNQEANSGFLQNMAQEIASSSGPSQLNFIQNISQSQLQLTPAPVKAPYDNNEMVNFTNHVGVPLNSTNQLVEPIDWANPLSEPVDWANYFGDDLLGSLGWATQLDDPVLHNNIPSQCHNEQQGASLFALPPPLDGHMNKKP. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03738 296 Coils Coil 133 153 - -
Seca5g03738 296 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Seca5g03738 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 59 IPR002100 GO:0003677|GO:0046983
Seca5g03738 296 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca5g03738 296 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca5g03738 296 CDD MADS_SRF_like 2 60 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca5g03738 296 PANTHER MADS BOX PROTEIN 3 147 - -
Seca5g03738 296 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Seca5g03738 296 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Seca5g03738 296 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03738 Seca-Chr5 94368490 94369706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03738 1 146 Type I MADS-box Gene Family AT5G55690 32.237 4.99e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca5g03738 SRF-TF 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03738 - - pvu:PHAVU_004G060500g 218.779