Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03732 ATGTCCCCAGCTGCAGGAGCCGTAGCTTTACACTCTTCCCTTTGCACCATCTCTTCCGATAAACCATCATCTCCTTCAAAATCAAGCACCAATTTGGCTGCCAAACCCAAAAGCCTCCTCCAAAACCATCCACTTTATACACCAACCCATGCAAAACTCTCCCTTCAATTCAAAGAGAAAATCTTGTGCCTTGAGGTAATGGGTGTTGATGCAGGTAAAGCACTGACCCAAAACCCTGACCTCCGCACAGCAACCATGGAATCTATTCATTCCATTATTTCCTTCCTTCTGACCAAAGGCATCCAGCATAAGGACTTGCCTAGGATCTTTGGCATGTGCCCCAAGATTCTCACCTCTGACATCAAAACTGATCTTAACCCAGTTTTTGATTTTCTCTTGCATGACCTCAAAGTCCCTGATCATAACTTTAGGAAGGTTATCAATAAGTGCCCAAGATTGCTTACATCTAGTGTGATTGACCAGCTTAAGCCAGCTTTGTTTTACCTAAAGAGACTTGGGTTCAAGGATTTGGCACCCTTGGCTTATCAAGATTCTGTTCTGTTGGTGTCTAATGTAGAGAGGACCCTTATCCCTAAGCTGAAGTATTTGGAGAATTTGGGATTTTCCAAGGATGAGGCTAGATGTATGGTGTTGAGATGTCCAGCATTGTTCACTTTCAGCATAGAAAATAATTTTCAGCCCAAGTTTGAGTATTTTTCTGTGGAAATGGGAGGAAAATTGAAGGAGCTGAAAGAATTTCCTCAGTACTTCGCTTTTAGTTTGGAGAACAGGATAAAGCCTAGACACATGGAGGTTGTGCAAAGTGGAATCAATTTGCCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTAGGGAGCTGATAAAGAAAGGGGGTGGATGA 906 0.4249 MSPAAGAVALHSSLCTISSDKPSSPSKSSTNLAAKPKSLLQNHPLYTPTHAKLSLQFKEKILCLEVMGVDAGKALTQNPDLRTATMESIHSIISFLLTKGIQHKDLPRIFGMCPKILTSDIKTDLNPVFDFLLHDLKVPDHNFRKVINKCPRLLTSSVIDQLKPALFYLKRLGFKDLAPLAYQDSVLLVSNVERTLIPKLKYLENLGFSKDEARCMVLRCPALFTFSIENNFQPKFEYFSVEMGGKLKELKEFPQYFAFSLENRIKPRHMEVVQSGINLPLSVMLKSTDEEFRELIKKGGG. 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03732 301 PANTHER CGI-12 PROTEIN-RELATED 31 295 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 Gene3D Transcription termination factor 3, mitochondrial 123 298 IPR038538 -
Seca5g03732 301 Pfam mTERF 187 292 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 Pfam mTERF 63 174 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 107 139 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 144 175 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 72 102 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 247 278 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 SMART mt_12 214 246 IPR003690 GO:0003690|GO:0006355
Seca5g03732 301 FunFam Transcription termination factor MTEF1, chloroplastic 132 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03732 Seca-Chr5 94321752 94322657 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca5g03732 mTERF 7.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03732 K15032 - gmx:100788221 493.812