Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03730 ATGACGTCACGTTCCGGCGCCGGCGGCGGAAGCGGAAGCGCCAGGACCCGAGTGGGGAAGTATGAACTAGGTCGGACCCTTGGCGAGGGCAATTTCGCGAAGGTGAAGTTTGCGAGGCATGTGGAAACTGGAGAACATATGGCCATCAAAATTCTTGACAAGGAAAAAGTTCTCAAGCACAAAATGATTGGTCAGATAAAGCGAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACAAAGATATATATTGTATTGGAATTTGTGACTGGTGGGGAGTTGTTTGATAAAATTGCACGCAATGGAAAGTTGAAAGAAGATGAAGCGAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCTCCAGAGGTGATCCACAACAAAGGCTATGATGGTGCAAAGGCAGATCTCTGGTCATGTGGTGTTATTCTATTTGTTTTAATGGCTGGCTATTTGCCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCCGAGTTCACGTGTCCCCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAATCCTTCCACGCGGATTACAATTTCTGAGGTCATTGAGAATGAGTGGTTCAAAAAGGGATATAAGCCTCCTGTGTTTGAACAGGCCAATGTTAGTCTTGATGATGTAAATTCTATTTTTGGTGAAGCTACGGTAAGTTTGCGTGAAGAGGGGCATGTAGCACCAACAACCATGAATGCATTTGAGCTTATCTCTAAATCTCAGGGCCTCAACCTTAGCAGTCTTTTCGAAAAGCAAATGGGACTTGTTAAAAGGGAAACAAGGTTCACATCCAAATGTTCAGCAGATGAGATTATTTCAAAAATTGAGCAAGCTGCAGGACCTCTAGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTGGAGGTGGCCCCTTCACTTTACATGGTTGAGCTACGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGGTAAGTTTAATGCACAATTTAATGTGTATATGTTTATATATGGGAGTAAAATTAATTCCTCTACATTATTACGAGTTGTGTTTTACCCAGTAA 1353 0.4117 MTSRSGAGGGSGSARTRVGKYELGRTLGEGNFAKVKFARHVETGEHMAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARNGKLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQEDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFTCPPWFSSSAKKLIKRILDPNPSTRITISEVIENEWFKKGYKPPVFEQANVSLDDVNSIFGEATVSLREEGHVAPTTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEQAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKVSLMHNLMCICLYMGVKLIPLHYYELCFTQ. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03730 450 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Seca5g03730 450 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Seca5g03730 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 18 420 - -
Seca5g03730 450 CDD CIPK_C 316 421 - -
Seca5g03730 450 Gene3D Transferase(Phosphotransferase) domain 1 101 281 - -
Seca5g03730 450 Gene3D Kinase associated domain 1, KA1 310 432 - -
Seca5g03730 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca5g03730 450 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Seca5g03730 450 FunFam Non-specific serine/threonine protein kinase 309 432 - -
Seca5g03730 450 CDD STKc_SnRK3 20 273 - -
Seca5g03730 450 ProSiteProfiles Protein kinase domain profile. 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03730 450 SUPERFAMILY Protein kinase-like (PK-like) 18 289 IPR011009 -
Seca5g03730 450 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03730 450 FunFam Non-specific serine/threonine protein kinase 14 312 - -
Seca5g03730 450 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Seca5g03730 450 SMART serkin_6 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03730 450 Pfam NAF domain 312 372 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03730 Seca-Chr5 94294347 94302192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03730 13 421 CBL-interacting serine-threonine protein kinases AT1G01140 70.702 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca5g03730 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03730 - - gmx:100788746 755.362