Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03725 ATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACCCTCTCATCTAAGAACGTCAAGAATCTGGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATTAAGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGATGATGTCACATTGGAGTATCTTAGATTGACTGGAAGAAGTGAAGAGACGGTTTCAATAATAGAATCATATTTACATGCAAACAGATTGTTTGTTGACTGTAAGGAGGTAATATCTTCTGTTGCAATAAAAAGTATGTTATGA 375 0.416 MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRIKMPTKVLHITTRKSPCGEDDVTLEYLRLTGRSEETVSIIESYLHANRLFVDCKEVISSVAIKSML. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03725 124 Pfam Ribosomal protein S10p/S20e 24 80 IPR027486 -
Seca5g03725 124 PRINTS Ribosomal protein S10 family signature 59 74 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03725 124 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03725 124 SMART Ribosomal_S10_2 24 112 IPR027486 -
Seca5g03725 124 Gene3D Ribosomal protein S10 domain 3 104 IPR036838 -
Seca5g03725 124 SUPERFAMILY Ribosomal protein S10 22 91 IPR036838 -
Seca5g03725 124 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 14 78 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03725 Seca-Chr5 94197741 94200987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03725 1 87 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 78.161 3.47e-42 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03725 K02969 - cit:102621376 147.132