LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03725	ATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACCCTCTCATCTAAGAACGTCAAGAATCTGGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATTAAGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGATGATGTCACATTGGAGTATCTTAGATTGACTGGAAGAAGTGAAGAGACGGTTTCAATAATAGAATCATATTTACATGCAAACAGATTGTTTGTTGACTGTAAGGAGGTAATATCTTCTGTTGCAATAAAAAGTATGTTATGA	375	0.416	MAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRIKMPTKVLHITTRKSPCGEDDVTLEYLRLTGRSEETVSIIESYLHANRLFVDCKEVISSVAIKSML.	125

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03725	124	Pfam	Ribosomal protein S10p/S20e	24	80	IPR027486	-
	Seca5g03725	124	PRINTS	Ribosomal protein S10 family signature	59	74	IPR001848	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g03725	124	PRINTS	Ribosomal protein S10 family signature	22	35	IPR001848	GO:0003735\|GO:0005840\|GO:0006412
	Seca5g03725	124	SMART	Ribosomal_S10_2	24	112	IPR027486	-
	Seca5g03725	124	Gene3D	Ribosomal protein S10 domain	3	104	IPR036838	-
	Seca5g03725	124	SUPERFAMILY	Ribosomal protein S10	22	91	IPR036838	-
	Seca5g03725	124	PANTHER	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	14	78	IPR001848	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03725	Seca-Chr5	94197741	94200987	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca5g03725	1	87	Cytoplasmic Ribosomal Protein Gene Family	AT3G47370	78.161	3.47e-42	134

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03725	K02969		-	cit:102621376	147.132

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