Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03723 AAAGTTACTGAAATCTTGAAAAACCCTAAATTCTGGTTTGGTGGGCCCCGTCTGCACCACGAGAAGAGAGCAGAGCTCGCATTTTGGTGTTACAAATTCTCAAGAGGGGATCGTTTTTGCTTGGAGGAAACAACGATGGCTTACGCTGCGATGAAACCTACTAAGCCCGGTTTGGAGGAGTCTCAAGAACAGATACATAAGATTAGGATCACCCTCTCATCTAAGAACGTCAAGAATCTGGAGAAAGTTTGCACCGACTTGATCCGTGGTGCCAAGGACAAGCGCCTTAGGGTCAAGGGTCCTGTTAGGATTAAGATGCCAACTAAAGTTCTTCACATTACCACCAGGAAATCCCCCTGTGGAGAAGATGATGTCACATTGGAGTATCTTAGATTGACTGGAAGAAGTGAAGAGACGGTTTCAATAATAGAATCATATTTACATGCAAACAGATTGTTTGTTGACTGTAAGGAGGTAATATCTTCTGTTGCAATAAAAAGTATGTTATGA 510 0.4255 KVTEILKNPKFWFGGPRLHHEKRAELAFWCYKFSRGDRFCLEETTMAYAAMKPTKPGLEESQEQIHKIRITLSSKNVKNLEKVCTDLIRGAKDKRLRVKGPVRIKMPTKVLHITTRKSPCGEDDVTLEYLRLTGRSEETVSIIESYLHANRLFVDCKEVISSVAIKSML. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03723 169 Pfam Ribosomal protein S10p/S20e 69 125 IPR027486 -
Seca5g03723 169 PRINTS Ribosomal protein S10 family signature 67 80 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03723 169 PRINTS Ribosomal protein S10 family signature 104 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03723 169 SUPERFAMILY Ribosomal protein S10 67 131 IPR036838 -
Seca5g03723 169 Gene3D Ribosomal protein S10 domain 48 133 IPR036838 -
Seca5g03723 169 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 52 123 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca5g03723 169 SMART Ribosomal_S10_2 69 157 IPR027486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03723 Seca-Chr5 94178092 94186664 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03723 46 132 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 78.161 1.71e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03723 K02969 - cit:102621376 147.132