Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03720 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGATAGTGGAAATCATAGCAAGGTTGGAGATAGGAGCCCAAAAGCATATGATAATGATACTATGGTATTTATATCCATGGCTCAAGAGTTGAAGGATGAAGGGAACAAGCTGTTCCAAAAGCGGGATGCTAAAGGAGCTATGGTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGGAATCATATAGATGTGTCCTATCTGCGGAGTAACATGGCTGCATGCTATATGCAGATGGGACTCAGTGAATACCCTAGGGCAATTCATGAATGCAATTTGGCTCTTGAAGTAACACCGAAATACAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGATGCTTTAAATAGGCTGGATTTAGCACTGAGAGATGTTAGTACTGTTTTGAAGATAGAGCCAAATAATATCATGGCGTTGGAGATCTCAGATAAGGTGAAACATGCACTTGAAGATAAAGGTTTAAGAGTAAATGATACAGAAATTGAGTTGCCTCTGGATTATGTTGAACCTCCTTATGCTTTGCCTCCCAAAACAGTAGTGAAAGAAAAGAAACGCAAGAAGAAGAGCAACAAAGCGAAGGTGAAGACTTCCGATGAAATTGTAGAAAAGCATGCTGAGGAGAAATTAGAAGAGAAGAAAGCTGAGGAAAGTATTGTAGTAAAGAAGGCTGAGGACAGTGTGAAAGAGAAGGCTAACACATCTAAAAAGAAGAAGGCCAAGGAAAAAATTGATAAGGAGAAGGATGATGTTAAGGAGGTCAATGAGGAGAAAAGTAATGGAAGAAGTGAAGATATACCTAAGAAAACAGCAAAACTTGTTTTTGGTGAGGATATTAGATGGGCTGAATTGCCAGTTAATTGCAGCCTCTTTCAGCTAAGACAAGTTATTTGTAACCGGTTCCCAAGCCTAGGAGCAGTTCTTGTCAAATATAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCGCAGGGTTCTATCCGGCTATACATAGTAGAAACTAATCCTGTTCAAGATCCATTCTATGAGAAACTTCATGTGAAGGATGAGGAAAAGGTTATCATTGATAATACTCCTAAGAATGGTCGCGTGGTGAAAGCAAAGGAGATTATTTGCTCATCTTGCATTGAGGATTGGATAATTCAGTTTGCTCAACTATTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTAGATTTTCATGAACTTGGGATGAAGCTTTTTTCAGAGGCTGTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGGTAAGTTCCAAGAGATGGCAGCTCTAGCACTATTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGGAAGAAAGTGTATTTCACAGAAGATTCTTCTAAAGAGAATATATATGAACAAATCAAAAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCTGGAGATAAATATGAAGCAGCCATTAAAATTAAGTCAGATTTTTATGAAGGCTTCCTAGCACTAGGCCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCACTCAGTAGTAATGTAGATTTAGCAACATGGCCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAACATGGAGAAAGGAATGATGATATGGGAAGAATCAGAAGGACAACAGTTGACTGAAACCTCCAATCCGAAGGATATTAGATTGCATTTGCAGAAGATGGGGTTGGATGGGCTATTTAAAAATATGTCATCAAAGGAAATTGCTGCACTGGCAGCAAACATGAGGTCTCAAATAAATCTCCTGTGGGGTACCATGTTATATGAACGCTCAATTGTGGAATTCAAATTAGGGCTACCGGTGTGGCATGAATGTCTGGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTGATGTTGAAAAACCACTGTTCAAATAACACTGCTGCAGATGGTCTAGGTTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTTGCAGAAAGGAGTTCCATCATTTCGTTTGGAACCCTTGTTTAGAAGAAGAGTATCAAAAATTTATCATGCCTTTGAGCTTGTATGA 2202 0.3942 MGKKKKQVGETSEDSGNHSKVGDRSPKAYDNDTMVFISMAQELKDEGNKLFQKRDAKGAMVKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYDALNRLDLALRDVSTVLKIEPNNIMALEISDKVKHALEDKGLRVNDTEIELPLDYVEPPYALPPKTVVKEKKRKKKSNKAKVKTSDEIVEKHAEEKLEEKKAEESIVVKKAEDSVKEKANTSKKKKAKEKIDKEKDDVKEVNEEKSNGRSEDIPKKTAKLVFGEDIRWAELPVNCSLFQLRQVICNRFPSLGAVLVKYRDQEGDLVTITSDEELRWAETGSQGSIRLYIVETNPVQDPFYEKLHVKDEEKVIIDNTPKNGRVVKAKEIICSSCIEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLFSEAVEETVTSEEAQGLFDMAGGKFQEMAALALFNWGNVHMSRARKKVYFTEDSSKENIYEQIKSSYEWAQKEYAKAGDKYEAAIKIKSDFYEGFLALGQQQFEQAKLSWYYALSSNVDLATWPSTEVLQLYNSAEDNMEKGMMIWEESEGQQLTETSNPKDIRLHLQKMGLDGLFKNMSSKEIAALAANMRSQINLLWGTMLYERSIVEFKLGLPVWHECLEVAVEKFELAGASPTDIAVMLKNHCSNNTAADGLGFKIDEIVQAWNEMYEAKKLQKGVPSFRLEPLFRRRVSKIYHAFELV. 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03720 733 SUPERFAMILY CAD & PB1 domains 280 365 - -
Seca5g03720 733 SUPERFAMILY TPR-like 38 154 IPR011990 GO:0005515
Seca5g03720 733 Gene3D Tetratricopeptide repeat domain 37 166 IPR011990 GO:0005515
Seca5g03720 733 Coils Coil 218 238 - -
Seca5g03720 733 MobiDBLite consensus disorder prediction 1 27 - -
Seca5g03720 733 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Seca5g03720 733 SMART PB1_new 279 356 IPR000270 GO:0005515
Seca5g03720 733 SMART tpr_5 114 147 IPR019734 GO:0005515
Seca5g03720 733 SMART tpr_5 40 73 IPR019734 GO:0005515
Seca5g03720 733 SMART tpr_5 78 113 IPR019734 GO:0005515
Seca5g03720 733 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Seca5g03720 733 ProSiteProfiles PB1 domain profile. 279 356 IPR000270 GO:0005515
Seca5g03720 733 PANTHER PROTEIN CLMP1 3 731 IPR044517 -
Seca5g03720 733 MobiDBLite consensus disorder prediction 236 275 - -
Seca5g03720 733 MobiDBLite consensus disorder prediction 1 28 - -
Seca5g03720 733 Gene3D - 274 356 - -
Seca5g03720 733 Coils Coil 248 275 - -
Seca5g03720 733 Pfam PB1 domain 281 354 IPR000270 GO:0005515
Seca5g03720 733 CDD PB1 287 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03720 Seca-Chr5 94157896 94162825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03720 23 147 Calmodulin-binding Proteins AT3G25230 33.094 1.96e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03720 K26538 - gmx:100820306 1149.81