Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03705 ATGGTCACTTCTGTTTATTATAAACACAGCCTTTTTTTTGGTTTAATTTTTTTTCATACAGGAGCCTACATTGACAAGAAGTGCCCCTTCACTGGCACTGTCTCCATCAGGGGTCGTATCCTAGCGGCTTTTTGTTTACTTGTTCTTTGTAGATATGAAAAAAGGCATTCAAATATCCCTGCACACATATCACCTTGTTTCCGTGTGAAGGAAGGTGATCACGTGATTATTGGACAATGCAGGCCACTCTCAAAGACAGTGAGATTCAATGTGTTGAAAGTGATCCCAGCTGGATCTTCTAGTGGTGCGAAGAAGGCATTTACTGGAATATGA 333 0.4084 MVTSVYYKHSLFFGLIFFHTGAYIDKKCPFTGTVSIRGRILAAFCLLVLCRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGI. 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03705 110 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 51 102 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 SUPERFAMILY Nucleic acid-binding proteins 48 98 IPR012340 -
Seca5g03705 110 ProSitePatterns Ribosomal protein S17 signature. 72 84 IPR019979 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 Gene3D - 47 110 - -
Seca5g03705 110 Pfam Ribosomal protein S17 51 93 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 PRINTS Ribosomal protein S17 family signature 39 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 PRINTS Ribosomal protein S17 family signature 72 82 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 PRINTS Ribosomal protein S17 family signature 82 89 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca5g03705 110 Gene3D - 18 46 - -
Seca5g03705 110 Pfam Ribosomal_S17 N-terminal 20 41 IPR032440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03705 Seca-Chr5 94036397 94036989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03705 21 110 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 70.370 4.97e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03705 K02949 - cpap:110807031 156.377