Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03704 ATGTGTGTTCAGGATGCAGAGCAAGTTGCCCCAAATGAGGATAACAACAGAGGCAAGTCTTGGCCTTTGTATGGTGAGCTTTTGCTTACCCAGATGGACAATTGGGAAAAAGGACCTTCTTTCACTGACAGGATGAGTGTTCAAAGTTCTTTCCCTCTGGAAAGCATATGCGAGGACACAGTTATTGCTGACAAGAAACAGAACCTGATGAATTTTGTCCCTGCTCTTCGCTCTGGAGAGTGGTCTGATATTGGAGAACGCCCTTACATGGAGGATACTCACATATGCATTGAAGATTTGGCAAAGAAGTTTAATTACAACAAACTTCCTGAAGAAGCTGTTTCCTTTTATGGTGTGTTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATCTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGATCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGATGCTGCATTTTCAAAAACATCCTCTCTTGAGTCTTCCCTTTCTTCTGGTACAACTGCACTAACTGCAATCATAATTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCAGGGCTGTCTTGTCCCGTCAAGGAAGGGCTATAGAAATGTCCAAAGATCATAGGCCAAACTGCATCAAAGAAAGGAAGCGGATTGAGTCCCTAGGTGGATTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTGTCACTCGTGCTCTAGGTGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGATGGAATCTGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCATAATGATGAGCAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATCAAGAGAGGATCAACAGACAACTTGACAGTTGTAATGGTGTGCTTTAACTCAGAACCACCACCACCTGTGGTTGTAGAAAGAGCTCGAGTAAGGAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAAATGCCTGCTAGAAGGGTAG 1128 0.4326 MCVQDAEQVAPNEDNNRGKSWPLYGELLLTQMDNWEKGPSFTDRMSVQSSFPLESICEDTVIADKKQNLMNFVPALRSGEWSDIGERPYMEDTHICIEDLAKKFNYNKLPEEAVSFYGVFDGHGGKSAAQFVRDHLPRVIVEDVNFPLDLEKVVKRSFLETDAAFSKTSSLESSLSSGTTALTAIIIGRSLLVANAGDCRAVLSRQGRAIEMSKDHRPNCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEQLCCKEIVQEAIKRGSTDNLTVVMVCFNSEPPPPVVVERARVRRSISAEGLQNLKCLLEG. 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03704 375 SMART PP2C_4 67 340 IPR001932 -
Seca5g03704 375 Pfam Protein phosphatase 2C 89 334 IPR001932 -
Seca5g03704 375 ProSiteProfiles PPM-type phosphatase domain profile. 77 342 IPR001932 -
Seca5g03704 375 FunFam Probable protein phosphatase 2C 22 60 345 - -
Seca5g03704 375 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Seca5g03704 375 CDD PP2Cc 77 342 IPR001932 -
Seca5g03704 375 SMART PP2C_SIG_2 92 342 IPR001932 -
Seca5g03704 375 SUPERFAMILY PP2C-like 69 344 IPR036457 -
Seca5g03704 375 Gene3D - 60 346 IPR036457 -
Seca5g03704 375 PANTHER PROTEIN PHOSPHATASE 2C 65 340 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03704 Seca-Chr5 94026965 94030080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03704 66 375 PP2C-type Phosphatase Gene Family AT2G25620 60.256 1.20e-135 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca5g03704 PP2C 3.9e-73 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03704 K14803 - gmx:100813157 582.793