Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03699 ATGGCAGGAATGCTTCCAGGAGTTGAATGTGCTCGAAGAAGAAGGTTCCATAAGAGTGGAGGATGCTTGGATTCTCCATCTCTCTCTCCCCATAACTCCACAAGACGCTCTTCTTTCTGTTTGTATGCAAGTAACCATGAATCCCGTCTTTCTAATTCATCCTCTTCTTCATCACTGCAGCAAAGAAGCATGTTATACCAGGCACAAACAGATGAGAGTATGGTAGGAGCAGCCAGAGAAGCCAAACAGAGATTGGATGACAAGTTCAGAGCACAAAGGGTATCAGAAAACAAAAGGCAAAGTAGCATAAATTGTGTGGAGGAGAGAAGAAGAAACTTAGGAGAGTTGCAGACAGAGGTATATGGATCAAAGAAAAGTGGTCCAAGGAGGTTCAGTTGGAGCAAATTGAGCTGGAAGGCGTCAGAACAAGAGGACTGTGCCGTTTGTTTGGAACCATTCAGGAATGGAGAGACATTGACCCCTCTCCCTTGTGCACATAGATTCCATTCCAGATGCTTGAAACCATGGTTAGATAATAATTCTCACTGTCCATGCTGCAGAAAAGACATTCTTCTCCTCTAG 582 0.4416 MAGMLPGVECARRRRFHKSGGCLDSPSLSPHNSTRRSSFCLYASNHESRLSNSSSSSSLQQRSMLYQAQTDESMVGAAREAKQRLDDKFRAQRVSENKRQSSINCVEERRRNLGELQTEVYGSKKSGPRRFSWSKLSWKASEQEDCAVCLEPFRNGETLTPLPCAHRFHSRCLKPWLDNNSHCPCCRKDILLL. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03699 193 Pfam Ring finger domain 145 187 IPR001841 -
Seca5g03699 193 SUPERFAMILY RING/U-box 134 191 - -
Seca5g03699 193 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Seca5g03699 193 SMART ring_2 146 186 IPR001841 -
Seca5g03699 193 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 51 190 IPR044675 -
Seca5g03699 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 191 IPR013083 -
Seca5g03699 193 CDD RING-H2_PA-TM-RING 145 187 - -
Seca5g03699 193 FunFam Zinc finger family protein 120 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03699 Seca-Chr5 94006719 94008270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03699 1 90 C3H Transcription Factor Family AT2G15580 48.454 4.57e-20 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03699 - - gmx:100527583 265.003