Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03696 ATGCCTGGGATTCTGAGAGCCTTTTTGTTTTCTCCATCGTTGATATCCAGTTCTGGCTACTCTGGGCATTGGCTCATCGACAGAGAAAAGCATTCTTCAGTGTGGTTCTGGACACAAAAGTCCAGTATTTTGTGTTCATTGCTACCAAATAAGATTGAGTCATGCCCTTTGAATCTCCAGTTTGATGATGATGACTTAGTGGCATTTTCAGTAATTGGTTCACGAAGCATCCATCTTTCTGGTTATTTTGTGGCTGATGATGGGGATGACCTTAGGGATGACTATGAATATGAAAGTGATTCATTGGGAGAGGATGCTGTGGGAACTGATTCGGAGGAGTCATCTGAATATGATAGTGAAGATGGATATGCTGATGACTTTATTGATGATAGTGACAATGACTTGTACCCATCTTCACCAGTCCCAAATAGTGGAGTTATAATTGAGGAAATACCAGACGACGATGAACTTGAAAATGGAGATGGTCCAACTAAGCAATTGGAGAAAAGGGAACAGTTGGCTCACTTGAAAGAGAAAGACAGCAAAAGTTCTCAGCTTCCAGTTGTCGTTAGAGGTGAGACTGGTATTGTTCTGGAAAGTGAAGATGAAGATGGTTTCCCAATATCCACTGCAGAGAAGGGTAAATCTGAGTCTCAGAAGGCAGAAGCAGAAACAAAAAGAGAACAAGCGCATAAGAAAGCTGAGAAAGCCAATAAGAAGGCAAAAGATGTTGATCATTCTGCTAGCTTAAAACGAAAAGTTGAAAGTGCTGATGAAGATGAGCAGCTGCAAGATGGGAAAAAGAAGAAGAAAAATAAGTTGAAAGAAAATGGTAAAGAGGAAATTACTCCGGCATCGGGCAATGGCAAAGAGACTAATGTTACCACACCAGATGAAAAGCATCCTGAGGAGGTTAAAACCACAACCAACCTGAACAATGCTTCTTATGCAGAGGATGGGCATGATGGGAAACTATCCAATAACGAGGTCCCTGTTGAGAAAAAAACAAGAAGAAAAAGACCAAAGAATCTGAAGGAGAAAGCTGCTGCAAATCAAATATCTATTACTGCTGAAAATCAGAATGTGTCTTCCTCTAAGAAAAAAGGGAAGGAACAAACTGAAGCCAAGCCATCTCAAGTGAGAACCTTTCCAAATGGGTTGGTTATAGAGGAGGTATTTATGGGTAAACCAGATGGCAAAAGAGCTGCTCCTGGAAAGAAGGTCAGTGTTAAATATATTGGCAAGCTGAAAAAGGATGGGAAACTATTTGACTCAAATGTGGGAAGAATACCCTTTAAATTTCGCCTTGGACAAGTCATCAAGGGGTGGGAGGTTGGGGTCAATGGGATGAGGGTTGGGGACAAAAGAAGAATCACAATTCCACCATCTATGGGGTATGAAATTGCTCCATGTCTTCTTTTCTGTATTATACCTGAATGGCCTTTGTTGTCACTGTCTTCTTCTTTTCCACGTTCATCGCTCAGAATCCCTACTCCTGATTCAGTGAAGAAGAAGAAGAAGAAGAGCTCTGATGATGAGGAAGTTGAAGACTCAGCTGCAGCTGTTGTGAGGAATTTCTATGGAGGAATCAATGCGCATGACGTGGATTCTGTACAGTACCTTATTGCCGAGAATTGTATGTATGAAGACCTCGTCTTTCCCCTAAGCAAAGATCTGCAGTTTGTTATTGATGATTTGTCCTCGGAGGACTCCTCATCGGTTGGAGTCACATGGCATTTAGGTGCATTCTATTGTTCTTTATACCTTATATATGGGCGAGACTGTGTTGAACCTGCAATCAAGCCTGGGGATGCAACTTTGGTATGTGACTATTTTTTTATTTCATACAAAAATTATATTGTAAGGATTGGGGATAAAGAGAAAGGAGTGTGTGTATGTGTAACCAAAAGAAAGACCGGTTCCGTTACAGAACATCAAGAACTTTGA 1947 0.4104 MPGILRAFLFSPSLISSSGYSGHWLIDREKHSSVWFWTQKSSILCSLLPNKIESCPLNLQFDDDDLVAFSVIGSRSIHLSGYFVADDGDDLRDDYEYESDSLGEDAVGTDSEESSEYDSEDGYADDFIDDSDNDLYPSSPVPNSGVIIEEIPDDDELENGDGPTKQLEKREQLAHLKEKDSKSSQLPVVVRGETGIVLESEDEDGFPISTAEKGKSESQKAEAETKREQAHKKAEKANKKAKDVDHSASLKRKVESADEDEQLQDGKKKKKNKLKENGKEEITPASGNGKETNVTTPDEKHPEEVKTTTNLNNASYAEDGHDGKLSNNEVPVEKKTRRKRPKNLKEKAAANQISITAENQNVSSSKKKGKEQTEAKPSQVRTFPNGLVIEEVFMGKPDGKRAAPGKKVSVKYIGKLKKDGKLFDSNVGRIPFKFRLGQVIKGWEVGVNGMRVGDKRRITIPPSMGYEIAPCLLFCIIPEWPLLSLSSSFPRSSLRIPTPDSVKKKKKKSSDDEEVEDSAAAVVRNFYGGINAHDVDSVQYLIAENCMYEDLVFPLSKDLQFVIDDLSSEDSSSVGVTWHLGAFYCSLYLIYGRDCVEPAIKPGDATLVCDYFFISYKNYIVRIGDKEKGVCVCVTKRKTGSVTEHQEL. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03696 648 MobiDBLite consensus disorder prediction 94 379 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 498 513 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 158 184 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 489 513 - -
Seca5g03696 648 Gene3D Nucleoplasmin core domain 17 89 - -
Seca5g03696 648 SUPERFAMILY FKBP-like 357 467 - -
Seca5g03696 648 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 400 467 IPR001179 GO:0003755
Seca5g03696 648 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 405 466 IPR001179 GO:0003755
Seca5g03696 648 Gene3D - 350 479 IPR046357 GO:0003755
Seca5g03696 648 MobiDBLite consensus disorder prediction 206 280 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 349 363 - -
Seca5g03696 648 Pfam Nucleoplasmin-like domain 40 84 IPR041232 -
Seca5g03696 648 Coils Coil 220 240 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 94 132 - -
Seca5g03696 648 MobiDBLite consensus disorder prediction 322 336 - -
Seca5g03696 648 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 39 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03696 Seca-Chr5 93954350 93959580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03696 405 466 Calmodulin-binding Proteins AT5G48570 49.231 3.13e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03696 K14826 - gmx:100792856 598.201