Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03694 ATGGCTTTCCATGACCATCTATCACACGAAATCACTTTTCAGCCTTTCACCGACGAGCAGCAGTTAAGTCAAAGCAGAGACATGCAGAGGATGCTACCACTCTCCGGCGGCGGCGGTGCGGCGCCGACGTGGCTCAACAACGCCGCCACACTTCGGCAGCAGAATTTCCTCCACTTGCAACCGGATCACTCGACGGCGCAAAACGACGACGTTCGAGGACTGATGGGAACATCAGAGAAAAACACGGATCGGAATCGGACGGAAAGCAACGCTGAATCGGAGGATTTAGCAGAATACAAAGCGGACATTTTAGGTCATCCTCTCTATGACCAGCTTCTTTCGGCTCACGTTTCGTGTTTGAGGATCGCCACACCGGTGGACCAGCTTCCACGGATCGATGCTCAGCTTCAACAATCGCAGCGCGTGGTGGACAAATACTCTGGCCTTGGGAATGGAGTGGTAGATGAGAAGGAGCTTGATCAATTCATGACGCATTATGTTTTACTTCTCTGCGCTTTTAAAGAGCAATTGCAACAGCATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTCGAGCAATCTCTGCAAAGCTTGACCGTTTTGATGGATGATGAAGGAACAGGTGTATCTCCCGGGGAAGGAACTGGTGCAACCATGTCAGACGATGAAGAAGACCAAGCAGAGAGCAATGCTAACTTATACGAAGCAAGTTTGGATGGCGCTGATAGTCTCAGCTTTGGCCCTCTTGTTCCCACTGAAAGTGAAAGATCTTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATCGTGGACATAAGAGAAGAAATTCTACGGAAGAGAAGAGCCGGGAAGCTCCCTGGGGATACCACTTCCCTTTTAAAAGCATGGTGGCAGTCACATTCTAAATGGCCCTATCCAACGGAAGAAGACAAGGCTAGGTTGGTGCAGGAAACAGGATTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCACACCAATCCTTCATCTTCTAGTGGCTCCAAAAGCAAGCGCAAAAGTAGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1134 0.4859 MAFHDHLSHEITFQPFTDEQQLSQSRDMQRMLPLSGGGGAAPTWLNNAATLRQQNFLHLQPDHSTAQNDDVRGLMGTSEKNTDRNRTESNAESEDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTVLMDDEGTGVSPGEGTGATMSDDEEDQAESNANLYEASLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSAGETSNQSFM. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03694 377 SUPERFAMILY Homeodomain-like 291 355 IPR009057 -
Seca5g03694 377 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Seca5g03694 377 MobiDBLite consensus disorder prediction 63 93 - -
Seca5g03694 377 SMART HOX_1 291 356 IPR001356 GO:0003677
Seca5g03694 377 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Seca5g03694 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 93 360 - -
Seca5g03694 377 SMART ELK_2 269 290 IPR005539 GO:0003677
Seca5g03694 377 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Seca5g03694 377 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Seca5g03694 377 Gene3D - 295 372 - -
Seca5g03694 377 CDD homeodomain 292 353 IPR001356 GO:0003677
Seca5g03694 377 FunFam homeobox protein knotted-1-like 3 isoform X1 290 351 - -
Seca5g03694 377 MobiDBLite consensus disorder prediction 76 93 - -
Seca5g03694 377 Pfam ELK domain 269 290 IPR005539 GO:0003677
Seca5g03694 377 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Seca5g03694 377 MobiDBLite consensus disorder prediction 208 232 - -
Seca5g03694 377 MobiDBLite consensus disorder prediction 1 25 - -
Seca5g03694 377 Pfam KNOX1 domain 99 140 IPR005540 GO:0003677|GO:0005634
Seca5g03694 377 SMART KNOX2_2 148 204 IPR005541 GO:0003677|GO:0005634
Seca5g03694 377 MobiDBLite consensus disorder prediction 346 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03694 Seca-Chr5 93912213 93917512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03694 97 372 Homeobox Transcription Factor Family AT5G11060 81.071 1.58e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca5g03694 KNOX2 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03694 - - gmx:100816347 650.973