Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03677 ATGGAGGGCAGTGAATCTCAACCACTTGGAATTGATGAACCCAAAGAAATTTTTCTTGGTCAAGTTGTGTACAGTATAGATGAAGCTTACAACTTATACCAAGAACATGCTTTCAAAATGGGTTTCAGTGTAAGAAGAGGAAAGGAGTTGCATTATGATGATGAGAAAAAGAACATACGCTTGAAAGATTTTTATTGTTCTAAACAAGGGTTTAAGAATGATGAACCTGAAGGTGAAGTAACTTATGAAAGAGCAGATTCAAGAACAAATTGCAAAGCTATGGTGCGATTTAATGTGAGCAAGGATGGAGTATGGAAAATTACAAAGTTGGTATTGGATCACAACCATGAGTTTGTGCCTCCTAAGCAAAGACATTTGTTACGTTCTATCAGAAAAGTATCAAATGCCAAAGGAGGCATAATAAAGTCTATGGTGAATGCAGGTATGAAAGTTACAAATGTTTGGAGTTACTTAGGGGAAGAGGTTGGTGGATTTGATAAACTTGGTCTAACAATGAAAGATATGCATAATTATGTTTACACTGAAAAGTTAAAATTAATTGAAGCTGGAGATGCTCAGTCTTTAGTGAATCACTTACAAAATAGACAGACACAGGATGCCATGTTCTACTATAGTGTGCAGTTAGACCAAGAATCACGTTTGACAAATGTCTTTTGGAGAGATGGTAAATCCAAAGTTGATTATGATTGCTTTGGGGATGTTGTAGTTTTTGATACTACTTATCGTACTAATAAATATAATTTGATTTGTGCTCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGACATGTTTGGTTGTGCCTTGTTGTTTGATGAAACTGCAGTCTCTTTTTCTTGGTTGTTTAAAGTATTTTTGGAGAGTATGGGATATAAACAACCAAAAACAATCTTTACAGATCAAGATGCAGCCATGGCCAAAGCAATTGGAGAGGTAATGCCAAATACTTGTCATCGATTATGTTTGTGGCATATATCTAAAAATGCTCCTTCTCATTTGGGTGATCTTAATTCTGACTACAAGTTTCAAAGTTTGTTAAAAAAATGCATGAAAGGTTGTGATTCAAAAGAAGAATTTGAAAGCACTTGGGATGGAATGATGAATGAGTATAAGCTTCATGACCATCATTGGTTGAGCAATATGTATAAAATTCGTCACAAATGGAGCACTGCTTATAGCAAGGATATATTTTCTGCGGATATCAAGTCATCCCAAAGGAGTGAGAGTACAAATAGTGTATTGGCTGAGATTGCAGGTAAAACAACTAGTCTCACTCAATTCTTATTAGCATTCGAGAAGATGGTAAAAAAGTGGCGACAATTAGAGGTTGAGAAGGAATTCAAAAACAACCAAAGTATGCCTCCTCGAATTATAAATATTAGTGAGACTTTGCGACATGCATCTATGATATATACTCACAAGATTGGGGGATGTGATAACATATCATATCATGAAGTCATTTCGAATCACATGCCTAATAAGAAGCATATTGTATCATTTGACTCCTCCACTACAACAATTAATTGTAGTTGCCAGAAGTTTGATTCTATGGGCATTCTTTGTAGTCATGCTTTGCGAAATTTCAACATTAAAGGTATCTTAAGAATACCCGATCAATACCTGTTGAAAAGATGGTCAAAAAATGCAAGGTCCATGATTTATGAGCACAATGAAGATTCTAGCTCTAACAACATTAATTCAATGAGCAATAGTGACAATGCTAGTATTCTTTACCGTAATGCTATTATGAAGTCATTCTATAATCTGGTTTTGGAAAGTCAAGAGCATAAAGAAACTCAACAAATTATGTGGAAATTACTTGATGATGGAGTTAAGTGTGTGCAACAATGTGTCAGTAAGCTCAGTTTAAGTGCAAATGCAATAGAAAGTGAGAACAATTTCACTCAACATGAGGATAATGGGCAAGTTGCAGTTTTTAATCCTCTTCCTGCAAAGACCAAGGGAATGTCTAGTGCTCGTAAGAAAGGTCATTTTGAAAAAAGGAAACGATCAACCACAAAAGCAAAGCAAAATAAAGAGAAACAGAAAGAAGACAACTTTGGTGTTGTTAATTCTTCTATAGATGGATCTTCTAATGTTCCCTCTACTTCTATGGATGCATCTTTGCAGCAACATTGCCCTTTAAGTTGGGGATCAAATACTCAATCAATTTCATTCACTAGTATGTTACAAGGAATGAGCTCATGTAATTATTTAAGTCAGGTATATACAGATAATTAA 2262 0.3488 MEGSESQPLGIDEPKEIFLGQVVYSIDEAYNLYQEHAFKMGFSVRRGKELHYDDEKKNIRLKDFYCSKQGFKNDEPEGEVTYERADSRTNCKAMVRFNVSKDGVWKITKLVLDHNHEFVPPKQRHLLRSIRKVSNAKGGIIKSMVNAGMKVTNVWSYLGEEVGGFDKLGLTMKDMHNYVYTEKLKLIEAGDAQSLVNHLQNRQTQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDVVVFDTTYRTNKYNLICAPFVGVNHHWQNDMFGCALLFDETAVSFSWLFKVFLESMGYKQPKTIFTDQDAAMAKAIGEVMPNTCHRLCLWHISKNAPSHLGDLNSDYKFQSLLKKCMKGCDSKEEFESTWDGMMNEYKLHDHHWLSNMYKIRHKWSTAYSKDIFSADIKSSQRSESTNSVLAEIAGKTTSLTQFLLAFEKMVKKWRQLEVEKEFKNNQSMPPRIINISETLRHASMIYTHKIGGCDNISYHEVISNHMPNKKHIVSFDSSTTTINCSCQKFDSMGILCSHALRNFNIKGILRIPDQYLLKRWSKNARSMIYEHNEDSSSNNINSMSNSDNASILYRNAIMKSFYNLVLESQEHKETQQIMWKLLDDGVKCVQQCVSKLSLSANAIESENNFTQHEDNGQVAVFNPLPAKTKGMSSARKKGHFEKRKRSTTKAKQNKEKQKEDNFGVVNSSIDGSSNVPSTSMDASLQQHCPLSWGSNTQSISFTSMLQGMSSCNYLSQVYTDN. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03677 753 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 622 IPR031052 GO:0006355
Seca5g03677 753 Pfam MULE transposase domain 241 335 IPR018289 -
Seca5g03677 753 ProSiteProfiles Zinc finger SWIM-type profile. 501 539 IPR007527 GO:0008270
Seca5g03677 753 MobiDBLite consensus disorder prediction 655 714 - -
Seca5g03677 753 MobiDBLite consensus disorder prediction 664 683 - -
Seca5g03677 753 MobiDBLite consensus disorder prediction 694 714 - -
Seca5g03677 753 SMART 26again6 514 541 IPR006564 GO:0008270
Seca5g03677 753 Pfam FAR1 DNA-binding domain 32 120 IPR004330 -
Seca5g03677 753 Pfam SWIM zinc finger 509 532 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03677 Seca-Chr5 93813939 93816372 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g03677 MULE 3.5e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03677 - - tpra:123905334 1155.97