Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03669 ATGATCGTGCCTGTAAAAGGTTTTGCAGCTAGGGTTTCATTGAGATTTGAGAAGGGGCTGTGGAACTTTCTCTGCTGCAGCGGCGTGTTCCATAATCGACAGCGAAGATGGATCAAGAAGAAGCTCGCCAAGAAGATGAGGCAGAATAGGCCAATCCCTTACTGGATCCGCATGAGGACCAACAACACCATCAGGTATAATGCTAAGCGCAGGCACTGGCGCCGCACCAAACTCGGATTTTAA 243 0.4938 MIVPVKGFAARVSLRFEKGLWNFLCCSGVFHNRQRRWIKKKLAKKMRQNRPIPYWIRMRTNNTIRYNAKRRHWRRTKLGF. 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03669 80 SUPERFAMILY Ribosomal protein L39e 35 79 IPR023626 -
Seca5g03669 80 Gene3D Ribosomal protein L39e 31 80 IPR023626 -
Seca5g03669 80 FunFam 60S ribosomal protein-like L39 30 80 - -
Seca5g03669 80 ProSitePatterns Ribosomal protein L39e signature. 59 75 IPR020083 GO:0003735|GO:0005840|GO:0006412
Seca5g03669 80 Pfam Ribosomal L39 protein 38 78 IPR000077 GO:0003735|GO:0005840|GO:0006412
Seca5g03669 80 PANTHER RIBOSOMAL PROTEIN L39E 38 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03669 Seca-Chr5 93699614 93700418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03669 38 80 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.698 2.39e-23 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03669 K02924 - twl:119992691 93.5893