Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03658 ATGGCTGTGGAGAACCAAAGGGGTCATTTGGGGGAGGAAGATGGGGCCTGTGACCGCTTTCCTGTGGGTATGCGTGTTCTGGCTGTGGATGACGACCCAATTTGTCTTAAAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATCAGGTTACTACATCTAATCAGGCAATTGAGGCCCTGAGAATGTTGAGGGAAAACAGAAATAAGTTTGACCTCGTTATCAGTGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAATTGGTGGGACTTGAAATGGACTTACCTGTAATCATGTTGTCAGCACACAGTGATACAAAGTTGGTAATGAAGGGGGTTACACATGGTGCATGTGATTATTTGCTGAAACCGGTTAGAATTGAAGAGCTCAAGAACATTTGGCAACATGTAGTCCGAAAAAAGAAACCCGACCAGAATAAGGCTTCCAATGGCGAAAAAGCTCCTAATATTTCTGGAGGAGGCAGTCAGGGCATAATGTCAGACAACAGTGCTGAGCAGAATAAGAAGCTTGGTAAGAAAAGGAAGGACCAAAGTGAGGAGGAGGAAGAAGATGTTGAAGGAAATGCAGAAGATGATGACCCCTCAGCACAGAAGAAACCTCGTGTAGTCTGGTCTGTCGAGCTCCATAGGAAATTTGTTGCTGCAGTTAATCAACTGGGTTTAGATAAGGCTGTTCCGAAGAAAATACTTGACCTTATGAACGTTGAAGGTCTTACAAGGGAAAATGTTGCAAGTCATCTACAGAAATATAGACTCTATCTAAAAAAAGCCACCCAGCAAGCTAGCATGGTTGCTGCGTTGGGTAGTAGTGATCCTTACCTGCGTATGGGTACGATAGATGGATACGGAGATTTTTGCTCATCATCTGGATCTGGAAGGATCTCAAGCACCACATTACCATCATATGCCTCAAGTGGAATTTTTGGAAGGCTGAATTCCCCAGCTGCCTTGAACTTGAGAGGAATCAGTTCATCTGCACTAATCCGTCCTGTTCAGTCTCAAAACATTAATAACTCCTTAAACACACTTGGAAACATTCAGCCATCCATGTTTACTACAAATCAAAGTTCAAGCTTATTACAGGGGATTCCGACATCAATTGAGCTTAACCAATCTAAGCAAAACAACTGCACGTCTGGTATATCACAGTTAAATCAAGTTGATTCAAGCGGATTTTCAGTTGCCTCCGGCTTCCCAGACAGTAGGGCTGCTGTTAGTAATGCAAATAGTTCTCTACCTTGTGTCTCCAATAATCATTTAATGTTACAAGGGAATTCACATCAAACACATAATACAGGAGCCTTTAGAAATCAGTCTTCTGTTAGAGCCAGTACTTTGAGCACAGAATCTTTTGACATCGGCATCTGTGGTTCTTCTAATTTGTTGGATTATAATCGGTGTAATGAAAACTGGCAAAATGCAGCTCAATTGTCTAAATTTCCTGCTAATTCTTTGCCACTTTGTGAGGGTTTCAATAATGACCAACTGCCTCCCACTAGCATTAATGTTTCAAACTCAAGCACACATATTGGTAACAGTCCAGTGGATTTTAATTCTGGAATTGGAATTTCTGTTCCCTTGGAGGATGCCAGAAATGAGCTGCGCTGCCAAGAAGGCTTAATTGGGAATATTGTACAGCCTTCAAGTTACACACCCCGACAAAGGTGGGAAGAACATAAACTGGATTACAATCAAAACATGAGCCGTCCTTTCAATCCTGTAAATTCCAGTGGATTGACAAGTTCTTTGGGGCATAGTTTAAACCAAAATAAAACAATTTGCAGCAATAGAGTTGATGCATCTTTGGTTGGCCAACTAAATGGGGCTTCCTCATCAATTGCCCAGTGCACTGAAGTTGGGAAATTTTCTTCAGACATACAACTAAAGTCAAATGATGCCTACATATTGGAGCAAATGAAGTCCCAAGATGGATTTATTCAGAATTTTGGGACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGACATGACATTGATGGATGGAGAAATTGGATTTGATGCATACCCTGTTGGATCATGTATTTGA 2085 0.4168 MAVENQRGHLGEEDGACDRFPVGMRVLAVDDDPICLKVLENLLRKCQYQVTTSNQAIEALRMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVVRKKKPDQNKASNGEKAPNISGGGSQGIMSDNSAEQNKKLGKKRKDQSEEEEEDVEGNAEDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQASMVAALGSSDPYLRMGTIDGYGDFCSSSGSGRISSTTLPSYASSGIFGRLNSPAALNLRGISSSALIRPVQSQNINNSLNTLGNIQPSMFTTNQSSSLLQGIPTSIELNQSKQNNCTSGISQLNQVDSSGFSVASGFPDSRAAVSNANSSLPCVSNNHLMLQGNSHQTHNTGAFRNQSSVRASTLSTESFDIGICGSSNLLDYNRCNENWQNAAQLSKFPANSLPLCEGFNNDQLPPTSINVSNSSTHIGNSPVDFNSGIGISVPLEDARNELRCQEGLIGNIVQPSSYTPRQRWEEHKLDYNQNMSRPFNPVNSSGLTSSLGHSLNQNKTICSNRVDASLVGQLNGASSSIAQCTEVGKFSSDIQLKSNDAYILEQMKSQDGFIQNFGTLDDIMGAMVKREQNDMTLMDGEIGFDAYPVGSCI. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03658 694 SMART REC_2 24 136 IPR001789 GO:0000160
Seca5g03658 694 PIRSF RR_ARR_type-B 1 694 IPR017053 GO:0003677|GO:0003700|GO:0009736
Seca5g03658 694 Gene3D - 204 266 - -
Seca5g03658 694 FunFam Two-component response regulator 204 267 - -
Seca5g03658 694 SUPERFAMILY Homeodomain-like 206 265 IPR009057 -
Seca5g03658 694 SUPERFAMILY CheY-like 23 146 IPR011006 -
Seca5g03658 694 MobiDBLite consensus disorder prediction 143 207 - -
Seca5g03658 694 Gene3D - 23 156 - -
Seca5g03658 694 Pfam Myb-like DNA-binding domain 210 260 IPR001005 -
Seca5g03658 694 CDD REC_typeB_ARR-like 26 140 - -
Seca5g03658 694 MobiDBLite consensus disorder prediction 151 174 - -
Seca5g03658 694 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Seca5g03658 694 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Seca5g03658 694 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 353 IPR045279 GO:0009736
Seca5g03658 694 MobiDBLite consensus disorder prediction 175 189 - -
Seca5g03658 694 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 264 IPR017930 -
Seca5g03658 694 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 261 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03658 Seca-Chr5 93555552 93560831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03658 16 438 Response Regulator Gene Family AT2G25180 52.804 1.40e-128 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca5g03658 Response_reg 9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03658 K14491 - gmx:100807822 1156.74