Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03644 ATGATAATTATGCAGCCCTGTAGCAGAGAAATGCAAGGAATCAACTCTCTCTTGAACTCTTCTCAAATCTCTCTCCAAGACCTCCACAACAACAACAACCAGATCCAAATGAACCACCAACAACTCAACCCTCACTTCGACCCAACTTCCCACGATGATTTCCTTGACCAAATGCTCTCTACCCTTCCTTCTTGCTCCTGGCCTGACCTCAACCCCAACAATAAGCCCTTGTGGGACCCTAATAACGCCCCTGATATCAAGCCCGCTGAAACGACGCCGTCTACCGCTGAGAATGTCGCTTTCCCTTACGATGAACACGCCAACTTAGCATCCAAGTTCCGTAACCACCAGATCAGCGCCACCTCTCCTTCAACCAAAGCCGCTCTCATGCTTCACCAACACCTCCTCATGTCCAGAGACCCTAACCTTCTCCAGATGCCGCTTTCCTTGCCTGGAAACGACGTCGTTGACGCCACCACCTTCAAATCTCCCAATCCTAGTGGTGAAGCTTCAGTTCAAGCTCTCTACAACGGCTTCGCCGGATCTCTGCATGGCACCGGTCAAGCCTCCAACCAGCCTCAGCATTTTCAACATCCTCAGAATCCGATTCAGGGGCAGAATTTCGGAGGTGCAGTTGCGGGAGGCGCAACGAACCAAGCTCAGGCGAGCGGTTCAGCCGGTGGAGCACCGGCTCAGCCGAGGCCGAGGGTTCGGGCTAGGAGAGGTCAAGCGACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATTGCAGAGAGGATGAAGGCCTTGCAGGAACTGGTCCCCAATGCCAACAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGATTACGTGAAGTTCTTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCTCCCCTTGTTGCTGATATGTCCTCTGAGGTTATTATAAACCATTCAAGTGTTTTTCCTTTTCATACTTTACTAATCAGCTAG 1014 0.5187 MIIMQPCSREMQGINSLLNSSQISLQDLHNNNNQIQMNHQQLNPHFDPTSHDDFLDQMLSTLPSCSWPDLNPNNKPLWDPNNAPDIKPAETTPSTAENVAFPYDEHANLASKFRNHQISATSPSTKAALMLHQHLLMSRDPNLLQMPLSLPGNDVVDATTFKSPNPSGEASVQALYNGFAGSLHGTGQASNQPQHFQHPQNPIQGQNFGGAVAGGATNQAQASGSAGGAPAQPRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEVIINHSSVFPFHTLLIS. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03644 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 307 - -
Seca5g03644 337 MobiDBLite consensus disorder prediction 183 248 - -
Seca5g03644 337 FunFam Transcription factor bHLH66 240 305 - -
Seca5g03644 337 SMART finulus 249 298 IPR011598 GO:0046983
Seca5g03644 337 MobiDBLite consensus disorder prediction 183 226 - -
Seca5g03644 337 Gene3D - 238 300 IPR036638 GO:0046983
Seca5g03644 337 Pfam Helix-loop-helix DNA-binding domain 248 293 IPR011598 GO:0046983
Seca5g03644 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Seca5g03644 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 241 303 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03644 Seca-Chr5 93412733 93415212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03644 174 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 64.430 6.91e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca5g03644 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03644 - - gmx:100806899 379.022