Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca5g03632 | ATGGGTTTGGGAGTATTTGGTTCTGTTTTAGTTCTGACACTCTTCTTCAAGCATTTAGCATGCCAACAACCAAATACTGATGATTTCTTTGTGTCTGATTTCTTCAAGAAGATGGGTTTAGCATCTTCTAAGGCTTACAACTTCTCTTCTTCTGTTTGTTCATGGCAAGGGGTTACCTGTGATGCCAAGAGAGAACATGTTGTTGGGTTAGTTGTTTCTGGTATGGGCCTCTCTGGTCCTATTCCAGATACCACCATTGGCAAGCTTAGCAAGATTCAATCTTTGGACCTCAGCAACAACAAAATCACTGACTTGCCTTCAGATTTCTGGAGTTTAAGCTTTCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGCTCATTGACTAACAACATTGGAAACTTTGGTTTGCTAGAAGTATTTGACTTATCCAGCAACAATTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCTTCTGTGAGTCTGAAGGTCCTTAAACTTGACCACAACAAGTTTGAACAAAGCATACCTTCTGGGATTCTCAAGTGTCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAACTAAGCGGGGCACTTCCAGATGGTTTTGGTGCTGCTTTTCCTAAGCTCACAAGCTTGAACCTTGCTGGGAATAATATTTATGGACATGATTCAGATATTTCTGGGTTAAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCATTTCAGGGTTCTGTCATGAGCATGTTTCAAGGAAGGCTGGAAGTTATGGACCTTAGCAGAAACCAATTCCAAGGTCACATTTCTCAGGTACAGTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGCTTAGTGGGGAAATTTTCCAAAATTGGAATGAATCCCAGAATCTAAAGCACCTTAATCTTGCCCATAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATGCTCCCAGGATTGGAATATCTAAACTTGTCCAAAATTAGTCTGATTAGTTACATTCCTGCAGAAATTTCACAACTTAGTAATTTGAAAACACTTGATATTTCTATGAATCATCTTATAGGCCAAATCCCCTTTCTAAGGAATAAAAACCTCCAAATTCTTGACCTTTCCAACAACAACTTGAGTGGAGAAGTCCCTCCATCAGTCTTAGAGAAACTCCCATGGATGGAGAAATACAACTTCTCTTGTAATAACTTAACCCTTTGTGCTTTGGAAATCAAACCAGCTATCCTCAAAACAGCATTCTTTGGATTAGTGAACAGTTGTCCAATTGCTGCAAACCCAAGTCTCTTTAAGAAAAGAGCCACTGATCACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTTTCAATGATCTGCTTGCTTGTTGGACTTTTGTTTCTAGCAGTTAGTCGCCTAAGGAAAACAAAATCTTGGCCAGTTAAACAATCTTCATACAAAGAAGAACAAAATATGTCAGGTCCCTTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAACCAACATCTGTCCCAGTAGTAATCTTTGAGAAGCCACTGTTGAATATCACATTTGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCAGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTCCTACCTGGTGGCATTCATGTAGCAGTTAAAGTTCTGGTTGTTGGATCTACTTTGACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGTAGAATTAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGAATTGCCATATATGATTACATGGAGAATGGAAACTTGCAAAACTTGCTTTATGACTTGCCACTTGGGGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGACAGTAATGGGATTCAAACTGCTGGATCAGAAGGATTGCTCACAACTTGGAGATTTCGCCACAAAATTGCTCTTGGCACTGCCAGAGCATTGGCATTTCTGCATCATGGATGTTCACCACCAATTATTCACAGAGATGTCAAAGCTAGCAGTGTTTATTTGGACTATAACTTGGAGCCAAGGTTGTCTGATTTTGGGCTGGCTAAGATTTTTGGAAGTGGTTTGGATGAGGAGATTGCACTTAGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCCCATCTCCAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTTCTAACTGGGAAGAAGCCAGTTGGAGATGACTATCCTGATGAGAAAGAAACAACTTTGGTAAGTTGGGTCAGAGGATTGGTGAGAAAGAACAAAGCTTCAAGAGCTATTGATCCAAAAATTCATGACACAGGACCAGAAAAGCAAATGGAGGAGGCCCTTAAGATTGGTTATCTATGCACTGCTGACCTTCCTTCCAAGAGACCAAGCATGCAGCAGATAGTTGGACTTCTTAAAGATATTGAACTTGCTGCTAATTAG | 2565 | 0.4031 | MGLGVFGSVLVLTLFFKHLACQQPNTDDFFVSDFFKKMGLASSKAYNFSSSVCSWQGVTCDAKREHVVGLVVSGMGLSGPIPDTTIGKLSKIQSLDLSNNKITDLPSDFWSLSFLKSLNLSSNQISGSLTNNIGNFGLLEVFDLSSNNFSGEIPEAISSSVSLKVLKLDHNKFEQSIPSGILKCQSLVSIDLSSNQLSGALPDGFGAAFPKLTSLNLAGNNIYGHDSDISGLKSIVSLNISGNSFQGSVMSMFQGRLEVMDLSRNQFQGHISQVQSISNYNWSHLVYLDLSENQLSGEIFQNWNESQNLKHLNLAHNRFTRQKFPKIEMLPGLEYLNLSKISLISYIPAEISQLSNLKTLDISMNHLIGQIPFLRNKNLQILDLSNNNLSGEVPPSVLEKLPWMEKYNFSCNNLTLCALEIKPAILKTAFFGLVNSCPIAANPSLFKKRATDHKGMKLALALTLSMICLLVGLLFLAVSRLRKTKSWPVKQSSYKEEQNMSGPFSFHTDSTTWVADVKQPTSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDSNGIQTAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALSSPGYVPPEFSQPEFDTPSPKSDVYCFGVVLFELLTGKKPVGDDYPDEKETTLVSWVRGLVRKNKASRAIDPKIHDTGPEKQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIELAAN. | 855 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca5g03632 | 854 | Pfam | Leucine Rich Repeat | 378 | 397 | IPR001611 | GO:0005515 | |
Seca5g03632 | 854 | PRINTS | Leucine-rich repeat signature | 285 | 298 | - | - | |
Seca5g03632 | 854 | PRINTS | Leucine-rich repeat signature | 354 | 367 | - | - | |
Seca5g03632 | 854 | Gene3D | Phosphorylase Kinase; domain 1 | 508 | 622 | - | - | |
Seca5g03632 | 854 | Gene3D | Ribonuclease Inhibitor | 374 | 428 | IPR032675 | - | |
Seca5g03632 | 854 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 508 | 622 | - | - | |
Seca5g03632 | 854 | Gene3D | Ribonuclease Inhibitor | 30 | 178 | IPR032675 | - | |
Seca5g03632 | 854 | SUPERFAMILY | L domain-like | 43 | 419 | - | - | |
Seca5g03632 | 854 | ProSiteProfiles | Leucine-rich repeat profile. | 378 | 400 | IPR001611 | GO:0005515 | |
Seca5g03632 | 854 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 229 | 849 | - | - | |
Seca5g03632 | 854 | Pfam | Leucine rich repeat | 162 | 222 | IPR001611 | GO:0005515 | |
Seca5g03632 | 854 | Pfam | Leucine rich repeat | 81 | 125 | IPR001611 | GO:0005515 | |
Seca5g03632 | 854 | ProSiteProfiles | Protein kinase domain profile. | 547 | 851 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 161 | 184 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 330 | 354 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 209 | 232 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 89 | 111 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 377 | 400 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 112 | 136 | IPR003591 | - | |
Seca5g03632 | 854 | SMART | LRR_typ_2 | 185 | 207 | IPR003591 | - | |
Seca5g03632 | 854 | Gene3D | Transferase(Phosphotransferase) domain 1 | 623 | 853 | - | - | |
Seca5g03632 | 854 | FunFam | Calmodulin-binding receptor kinase CaMRLK | 255 | 373 | - | - | |
Seca5g03632 | 854 | Gene3D | Ribonuclease Inhibitor | 278 | 373 | IPR032675 | - | |
Seca5g03632 | 854 | Gene3D | Ribonuclease Inhibitor | 179 | 277 | IPR032675 | - | |
Seca5g03632 | 854 | Pfam | Protein tyrosine and serine/threonine kinase | 551 | 844 | IPR001245 | GO:0004672|GO:0006468 | |
Seca5g03632 | 854 | ProSiteProfiles | Leucine-rich repeat profile. | 91 | 112 | IPR001611 | GO:0005515 | |
Seca5g03632 | 854 | SUPERFAMILY | Protein kinase-like (PK-like) | 524 | 846 | IPR011009 | - | |
Seca5g03632 | 854 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 106 | 201 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca5g03632 | Seca-Chr5 | 93241304 | 93243868 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca5g03632 | 70 | 853 | Receptor kinase-like Gene Family | AT4G39400 | 32.400 | 9.37e-109 | 359 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-2 | Seca5g03632 | PK_Tyr_Ser-Thr | 1.8e-31 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca5g03632 | - | - | gmx:100807051 | 1479.92 |