Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03629 ATGGCCGAAGTTGAACAAAACCGAAAGCAAGAAAATGAAAAACCAGAAGAAGAAGAGACGAGTCGACGACTCACTGACTCGGCGCCCTCCACCGAGTTACGCACTTCTAGTCCTCCCGATGAAGCGCAACCGAATTCAGAAACCCTAGTTGTCCCCTCGCACGATCACACTGCTCATTTGCAGGGAAGCTCCACTGCGGAGAAAGGTGGCAAAGACGAAAGTAAGGAGCCAGCTGGGCATCCCGGCAAGGAAATTGTTGTAAAAGATGCAGTTGAGGCACCTCAAACGCATCCAAAAAATCTACTTCAGGTGTCTGTGTGTTCAATGTCTGAGCTTTCACCAACTTCTGTTACACAATCTTTATCATCTGCCCCTAGTCCAACTGTGCCGGAAAAGAGACTGTCTCCTCCAAAGGCTGATAGTGTACATGTGCTTGAAGTAGACAAAAGAACTCCTGGTGGTAAAACCTTATCTTCTGTTTCTGTTGCAAGGGCATCTACATCTGATGGATACAATTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGATTGCTGTGCTAAGAAGATTGAATGCTGCAACCATTTAGGCCATGTGATGGATATTGTTTATAGAAGTCAACACAGTCATGATCCCCCGCATAAAACTAATTCCTCTAGGGAAAGTAAATCCCTGCCTTCCAATGAACCTAATATAGAAAACACTATTCCAAAGCAGTCTATCAAAGTTCTAAATGATTCTGAACCATCACCTTCTCCTAAAAATCCCCAACAAGAAACATCTTGCAGTACTGATAAGAAACGACAACACTCATCTAATGGTGAGAATGGTAAAGTTATTTTGAAGGAAGAGCATGTCAATGAACCAGAGCCAAAAAGAAGGCAAGTTGCATATGAATTCATTTTCTTCATAGGAAAAATGAAGAAAGGTGATTTAGCATGCTTGGATTCACCAGTAAAATCTGGAAAGAAACAAAAGTTTGTTGTACATGCAGCAGGGGATGTGGGGATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAAAAAATGGTGAAGGGGAATCCACATCCCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATGACTCAAACGCTGTCATTATAACATACAAAGGAGTACATGATCACGACATGCCTGTGCCTAAGAAACGACACGGCCAGCCTAATCCTCCGCTTGTTGCTGCTGCAGCACCTGCTTCAATGAACAATTCCCAGTTGAAGAAAACTGACTCGCCACAGAACCGGAAAACTTCTACTCAATGGTCTGTGGACACAGAAGGAGAATTAACCGGGGAAGCCTTGGACCTTGGTGGTGAGAAAGCAATAGAATCAGCTCGAACTCTTCTGAGTATAGGTTTTGAAATTAAACCATGCTGA 1473 0.4399 MAEVEQNRKQENEKPEEEETSRRLTDSAPSTELRTSSPPDEAQPNSETLVVPSHDHTAHLQGSSTAEKGGKDESKEPAGHPGKEIVVKDAVEAPQTHPKNLLQVSVCSMSELSPTSVTQSLSSAPSPTVPEKRLSPPKADSVHVLEVDKRTPGGKTLSSVSVARASTSDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCNHLGHVMDIVYRSQHSHDPPHKTNSSRESKSLPSNEPNIENTIPKQSIKVLNDSEPSPSPKNPQQETSCSTDKKRQHSSNGENGKVILKEEHVNEPEPKRRQVAYEFIFFIGKMKKGDLACLDSPVKSGKKQKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDDSNAVIITYKGVHDHDMPVPKKRHGQPNPPLVAAAAPASMNNSQLKKTDSPQNRKTSTQWSVDTEGELTGEALDLGGEKAIESARTLLSIGFEIKPC. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03629 490 SUPERFAMILY WRKY DNA-binding domain 347 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 MobiDBLite consensus disorder prediction 117 140 - -
Seca5g03629 490 MobiDBLite consensus disorder prediction 1 96 - -
Seca5g03629 490 MobiDBLite consensus disorder prediction 274 303 - -
Seca5g03629 490 MobiDBLite consensus disorder prediction 66 87 - -
Seca5g03629 490 SUPERFAMILY WRKY DNA-binding domain 165 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 Gene3D WRKY domain 155 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 Gene3D WRKY domain 336 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 MobiDBLite consensus disorder prediction 430 455 - -
Seca5g03629 490 Pfam WRKY DNA -binding domain 353 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 Pfam WRKY DNA -binding domain 169 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 MobiDBLite consensus disorder prediction 220 303 - -
Seca5g03629 490 MobiDBLite consensus disorder prediction 26 64 - -
Seca5g03629 490 FunFam WRKY transcription factor 336 412 - -
Seca5g03629 490 SMART WRKY_cls 167 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 SMART WRKY_cls 351 410 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 109 441 IPR044810 GO:0003700
Seca5g03629 490 MobiDBLite consensus disorder prediction 232 273 - -
Seca5g03629 490 ProSiteProfiles WRKY domain profile. 162 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 ProSiteProfiles WRKY domain profile. 346 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca5g03629 490 MobiDBLite consensus disorder prediction 1 25 - -
Seca5g03629 490 MobiDBLite consensus disorder prediction 411 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03629 Seca-Chr5 93204805 93210691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03629 102 490 WRKY Transcription Factor Family AT4G30935 53.571 1.23e-122 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca5g03629 WRKY 8.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03629 - - gmx:100127377 642.884