Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03625 ATGGGTGATGATAGTATTGATTTAACTACACCAACCAAAGGTTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAAAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGCTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAAACAAAAGAAGGTGTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACACATGCGTTAGCTACACCTAAAAAGAAGCAGTTCTTAAGATCTGCAAGGAGTATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGAGTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAAAATGAGATGAACCACTCTTTTTATTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGGTCTTTGTCGAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACAGTCGTTTTAAGACCTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACTTGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCGGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGATCCGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGGCATAATGAATTACTTGCAGATAATGATACACTTCATTCTATGCCCGAATTGAAGATGCATAAGGATATAGAGAAACATGGCAGAGAAGTTTACACTCATCAAAATTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATAATGGGCAATTATTAATTTTTATACTTGAGCAGCTTGTGGTTAATGGCAACAAAGTGAGCAAACATCGGAAAGTTGTTTACAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATCCCAAGTTATTACATTATTAATAGATGGACCAAATTGGCAACTAGTACTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGGAAAGTGAAAGCAAGTTAATTTCTGATGCATGGGCAAAATTATTTAAATGCATGCATTTGGCTGGTACATGTAAAGATAAACTACTCCTTGTCATAAATGAAGCTTCTAGTATTGAAATGAAATTGACTAAGATGAAAGGTGATGTTGGAGCAAGCAAGTTGAATGAATTAGAGTCATTTGTTGGCTCCACTGTACCAAAGAATGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGATGTGGAAAACGGATCAAGGGGGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAAGAACGAGACTTTGTAAAACTTGCCGACAATTTTCATATCATGATAGTCGTAATTGTCCCACAAAATCCTCTTCCTAA 2256 0.3537 MGDDSIDLTTPTKGLNDPVDTLEEWVPKCDEEIKPVVGKVFDTLEQGGDFYQRYAHTAGFSVRKATETKDKNGETKWKYFLCSKEGFKLETKEGVTELLVDDKKLPKTRRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHALATPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKELIKDSDAHMFLDNFRRKNEMNHSFYYDYEVDNEGRLKYVFWADGLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKVESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELTWKAIIIDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSALEAQRHNELLADNDTLHSMPELKMHKDIEKHGREVYTHQNFYIFQGELWSACVDCGVEETKEDNGQLLIFILEQLVVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEIPSYYIINRWTKLATSTPIFYYDGNVLEACSKLESESKLISDAWAKLFKCMHLAGTCKDKLLLVINEASSIEMKLTKMKGDVGASKLNELESFVGSTVPKNVDILPPQPSNTKGCGKRIKGGKEKAMEQQQKRTRLCKTCRQFSYHDSRNCPTKSSS. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03625 751 MobiDBLite consensus disorder prediction 703 722 - -
Seca5g03625 751 Pfam FAR1 DNA-binding domain 49 146 IPR004330 -
Seca5g03625 751 Pfam MULE transposase domain 267 361 IPR018289 -
Seca5g03625 751 Pfam SWIM zinc finger 566 587 IPR007527 GO:0008270
Seca5g03625 751 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 645 IPR031052 GO:0006355
Seca5g03625 751 SMART 26again6 566 593 IPR006564 GO:0008270
Seca5g03625 751 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03625 Seca-Chr5 93180198 93182453 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca5g03625 FAR1 1.6e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03625 - - mtr:112420857 936.791