Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03614 ATGAAGGAGAAGAGAGTTAGTAATATTTATATGTTGGATGACTTGGATTCTAGATTATCATCATCTTCTGATGCTGGAGTTAAAACATGTGGATTTAGTATTGATAAATTAACCCATGGTGGCCATGGAAACAGTACGACCTCTAGGTCTTTTAAAAGAGGAATGAAAAAGGGTTCTGAAGGACTGAAGTCAATTGGTCGATCACTAGGATTTGGGGTATCTAGGGCAGTGTTCCCAGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAGCTTTTTGTAATCTCATGCATTTTGGCTGTGTCTGTGGATCCACTATTTTTTTATCTCCCTGTCATCAATGATTCTTTACACTGTCTTGGTATAGACCGGAAGTTGGCAATTACAGTTACCACCTTGAGGACAATCATTGATGTTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGAGTTTTTGGGCGGGGTGAGCTTGTGATAGATCCAGCACAGATAGCCAAGCGATACTTACGGCGGTATTTCATCATTGATTTCTTGTCAGTGTTGCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTACTCACAACAAAACGGGCCTTGCTGTTCATTATCTTGCTTCAGTATATTCCTAGATTTCTCCGTATGGTACCATTGACTTGTGAACTTAAGAGAACAGCTGGTGTCTTCGCTGAAACTGCTTGGGCAGGTGCTGCGTATTATTTGCTATTATTCATGCTCGCCAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAGAAGGCTTGTAGTGACAATGGGTACAATAAAAACTTCTTGTATTGTGGCAACCAATACATGGACGGTTATAGTGCTTGGCAGAATAAAAGTGAAGATATTCTCACCTCCCGGTGCTCTCCAGATGATGATAATCCACCTTTTGACTATGGAATTTTCACACAAGCCTTGAAATCTGGTATTGTTTCATCTAAGAAGTTCTTCTCTAAGTACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACTAGCACCTACCCTGGGGAGGTTATCTTTTCAATAGCATTAGCCATAGCTGGCCTTATCCTCTTTGCACTTCTGATTGGTAACATGCAGACGTATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCACAAGAGCTCAGAGAGCGCGTGAGACGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAATCTTTGGTTCAGAGTCTCCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTCTGTCTGGCTTTAGTGAGAAGGGTTCCATTATTTGAGAGCATGGATGAGAGATTGCTGGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACTGAGAGTACTTACATTGTCCGGGAAGGAGATCCAGTTGATGAGATGCTTTTTATCATACGCGGTCGCCTAGAGAGTGTTACCACAGACGGTGGGAGGAGTGGGTTTTTTAATCGCGGTTTTTTAAAAGAGGCTGACTTCTGTGGAGAGGAGCTTCTAACCTGGGCACTGGATCCCAAATCTGGCGCTAACCTCCCATCTTCTACTCGAACAGTTAAGGCTTTAACTGAGGTTGAGGCTTTTGCTTTAACTGCTGAAGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACCTTCCGCTTTTACTCCCAACAATGGAGAACATGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAGGAAAATGATGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAAGGAACTCGCAGCAATGCCAGTGGCAGTTCCTACAGCCTCGGTGCCACCCTCTTGGCCTCAAGATTTGCTGCAAATGCTCTTCGTGGTGTACATCGCAATAGGAATGCTAAGACTGCCAGGGAGTTAGTGAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATATGTAA 2169 0.4306 MKEKRVSNIYMLDDLDSRLSSSSDAGVKTCGFSIDKLTHGGHGNSTTSRSFKRGMKKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDSLHCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLTTKRALLFIILLQYIPRFLRMVPLTCELKRTAGVFAETAWAGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDNGYNKNFLYCGNQYMDGYSAWQNKSEDILTSRCSPDDDNPPFDYGIFTQALKSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGANLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKMMELRRKEEPEESEGTRSNASGSSYSLGATLLASRFAANALRGVHRNRNAKTARELVKLQKPPEPDFTADDM. 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03614 722 Gene3D Jelly Rolls 494 614 IPR014710 -
Seca5g03614 722 CDD CAP_ED 496 627 IPR000595 -
Seca5g03614 722 SMART cnmp_10 496 627 IPR000595 -
Seca5g03614 722 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Seca5g03614 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 717 - -
Seca5g03614 722 MobiDBLite consensus disorder prediction 701 722 - -
Seca5g03614 722 Pfam Cyclic nucleotide-binding domain 518 607 IPR000595 -
Seca5g03614 722 Gene3D - 102 421 - -
Seca5g03614 722 Pfam Ion transport protein 99 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca5g03614 722 Gene3D Helix hairpin bin 424 487 - -
Seca5g03614 722 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Seca5g03614 722 ProSiteProfiles cAMP/cGMP binding motif profile. 496 626 IPR000595 -
Seca5g03614 722 SUPERFAMILY Voltage-gated potassium channels 91 418 - -
Seca5g03614 722 ProSiteProfiles IQ motif profile. 632 661 IPR000048 GO:0005515
Seca5g03614 722 SUPERFAMILY cAMP-binding domain-like 425 616 IPR018490 -
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 145 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03614 722 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03614 Seca-Chr5 93087717 93098063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03614 18 720 Ion Channels AT5G57940 80.595 0.0 1161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03614 K05391 - gmx:100820202 1306.2