Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03606 ATGATCATGGATATAAAGGGTGCAATGATGCCAATATTCCATTATGATCTATTCTTCTTGTTCTTAGTAATCTTTTCATTATTTTCATGCATCCATGGTGTGCCAACGGAGCAAGAGCTAGATCGAATCTCAGCTCTACCAGGGCAGCCACCAGTGACATTTTCTCAATTCTCTGGTTATGTCACTGTCAATGAGCAACATGGCAGAGCACTCTTCTACTGGTTCACTGAAGCCACCACTTCCCCTGAGAATAAACCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGCTCATCAGTGGCATACGGGGCATCAGAGGAAATTGGACCATTCCGTATAAACAAAACTGGCTCTTCTCTGTACCTTAACAACTATGCATGGAATAAAGAAGCAAATATCCTCTTTCTTGAATCACCTGCTGGAGTTGGTTTCTCATACACAAATACCAGTTCTGACCTCAAAACTTCTGGGGACAAAAGGACAGCTCAGGATGCTCTGACTTTTCTACTTAGATGGATGGAAAGATTTCCACAATATAAATATAGGGAATTTTACATTGCAGGGGAGAGCTATGCAGGGCACTATGTCCCCCAATTGGCTAAGAAAATCCATGATTATAATAAACAAAATCCCCATATCCTTAATCTTAAAGGGTTCATTGTGGGAAATGCTGTGACTGATGACTACTATGATGGGGTGGGAACCGTTACATATTGGTGGAGCCACTCTATGATATCTGATCAATCATACAAATCTATCCTCAAATATTGTAATTTCACTGAAAGAAAAACAACTAAAAAATGTGATGATGCTGTGAGTTATGCTGTGAACCATGAATTTGGGAACATTGATCAGTACAGTATCTATACCCCTGCATGCACAACACCACACAATGATACTCTAAGGCATGTTAGGTTCAAGAGTACAATGTTACATAGGATTGCTGGGTATGATCCTTGTACTGAAGATTATGCAGAGAAATATTATAATCGCCATGATGTGCAGAAAGCAATGCATGCAAATGTTACAAACATTCCTTACAAATGGACTGCTTGCAGTGGTGTGCTCAATAAACATTGGCAGGATTCTGAAGTTTCTATATTGCCCATTTACAAAGAGTTAATTGCAGCGGGTTTGAGAATCTGGGTTTTCAGTGGAGACACAGATTCGGTAGTTCCAGTAACTGCTACAAGGTTTTCTCTCAACCATCTCAACCTCACCATCAAAACTCGTTGGTACCCATGGTACTCAGGGGAACAGGTATTTTTGCCAAGTCTCAGCACACTCATGTTAAATAGAAAACAATGTTTGGTTGTAGGAGGATGGACAGAGGTGTATGATGGATTAACATTTGCAACTGTAAGAGGGGCTGGGCATGAAGTTCCATTATTTCAGCCAAAACGAGCTTACATACTTTTCAGGTCATTTTTGGCAGGGAAACAACTACCAAAATCTTGA 1458 0.406 MIMDIKGAMMPIFHYDLFFLFLVIFSLFSCIHGVPTEQELDRISALPGQPPVTFSQFSGYVTVNEQHGRALFYWFTEATTSPENKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNNYAWNKEANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALTFLLRWMERFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKQNPHILNLKGFIVGNAVTDDYYDGVGTVTYWWSHSMISDQSYKSILKYCNFTERKTTKKCDDAVSYAVNHEFGNIDQYSIYTPACTTPHNDTLRHVRFKSTMLHRIAGYDPCTEDYAEKYYNRHDVQKAMHANVTNIPYKWTACSGVLNKHWQDSEVSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLTIKTRWYPWYSGEQVFLPSLSTLMLNRKQCLVVGGWTEVYDGLTFATVRGAGHEVPLFQPKRAYILFRSFLAGKQLPKS. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03606 485 Gene3D - 320 357 - -
Seca5g03606 485 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 466 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 ProSitePatterns Serine carboxypeptidases, histidine active site. 449 466 IPR033124 GO:0004185
Seca5g03606 485 FunFam Carboxypeptidase 37 295 - -
Seca5g03606 485 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Seca5g03606 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 FunFam Carboxypeptidase 367 479 - -
Seca5g03606 485 Pfam Serine carboxypeptidase 48 478 IPR001563 GO:0004185|GO:0006508
Seca5g03606 485 Gene3D - 367 479 - -
Seca5g03606 485 SUPERFAMILY alpha/beta-Hydrolases 41 482 IPR029058 -
Seca5g03606 485 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Seca5g03606 485 Gene3D alpha/beta hydrolase 37 295 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03606 Seca-Chr5 93032826 93040096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03606 325 482 Calmodulin-binding Proteins AT2G22960 27.673 1.21e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03606 K16297 - gmx:100785391 791.186