Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03600 ATGGCAACACAATATGAAGTTGAGCATCCAAACAAGGCCTTCGGATGGGCAGCAAGAGATACTTCTGGTTTTCTCTCCCCTTTCAATTTCTCCAGAAGGGAAACGGGTGAGAAAGATGTGGCATTCAAAGTGTTGTACTGTGGGATATGCCACTCAGATCTCCACATGGTGAAGAATGAATGGGGCATTTCCACCTATCCACTAGTCCCAGGGCATGAGATTGTTGGTGTAGTGACAGAGGTGGGAAGCAAAGTACAAAAGTTCAAAATTGGGGACAGAGTAGGTGTGGGATGCATGATTGCTTCTTGCCGCACATGTCAAAAGTGTGTTGATAATCTTGAGAATTACTGCCCACAATTTACTCACACTTATAGTACCAAATACATTGATGGCACCACCACCTATGGAGGCTACTCTGACTCTATGGTAGCAGATGAGCACTTTGTGGTTCAAATTCCTGATAACATGCCTCTTGATGCTGCTGCACCTCTTCTTTGTGCTGGGATCACAGTGTATAGCCCTCTTAGATATTTTGGACTTGACAAGCCTGGTCTCCATGTGGGTGTGGTTGGTCTTGGTGGGTTAGGCCATGTGGCTGTCAAGTTTGCCAAAGCTTTTGGGGCTAATGTGACAGTTATTAGTACATCACCCAACAAACAGAAGGAAGCAATTGAACACCTTGGAGCTGACTCCTTTCTAATAAGCCGTGACCAAGATCAAATGCAGGCTGCAATGGGCACTATGGATGGTATTATTGACACAGTTTCTGCTAATCATCCTCTGTTACCTCTGCTTGGTTTGTTGAAGTCTCATGGAAAGCTTGTAATGGTGGGAGCACCAGAGAAGCCTCTGGAGTTGCCAGTATTTCCTTTACTTATGGGGAGAAAGATAGTAGCTGGCAGTAACATTGGGGGGATGAAGGAGACACAAGAGATGATTGACTTTGCAGCAGAACATAATGTAAAACCTGACATTGAAGTCATTCCTATTGATTATGTCAACACAGCAATGGAGCGTCTCCTTAGAGCCGATGTAAAATATAGATTTGTGATTGACATTGGAAACACACTGAAACCAAGCTCTTAG 1086 0.4429 MATQYEVEHPNKAFGWAARDTSGFLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMVKNEWGISTYPLVPGHEIVGVVTEVGSKVQKFKIGDRVGVGCMIASCRTCQKCVDNLENYCPQFTHTYSTKYIDGTTTYGGYSDSMVADEHFVVQIPDNMPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGANVTVISTSPNKQKEAIEHLGADSFLISRDQDQMQAAMGTMDGIIDTVSANHPLLPLLGLLKSHGKLVMVGAPEKPLELPVFPLLMGRKIVAGSNIGGMKETQEMIDFAAEHNVKPDIEVIPIDYVNTAMERLLRADVKYRFVIDIGNTLKPSS. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03600 361 Gene3D - 167 323 - -
Seca5g03600 361 PANTHER ALDEHYDE REDUCTASE 6 356 IPR047109 GO:0016616
Seca5g03600 361 CDD CAD1 14 352 IPR047109 GO:0016616
Seca5g03600 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Seca5g03600 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Seca5g03600 361 SUPERFAMILY GroES-like 21 184 IPR011032 -
Seca5g03600 361 Pfam Alcohol dehydrogenase GroES-like domain 38 152 IPR013154 -
Seca5g03600 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Seca5g03600 361 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Seca5g03600 361 Gene3D - 16 353 - -
Seca5g03600 361 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Seca5g03600 361 FunFam Uncharacterized protein 16 166 - -
Seca5g03600 361 SMART PKS_ER_names_mod 17 351 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03600 Seca-Chr5 93001698 93004049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03600 11 360 Monolignol Biosynthesis Gene Families AT4G37990 73.429 1.05e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03600 K23232 - gmx:100816901 621.698