Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03598 ATGCAGCAAGGTGATCCAACGGTCCTGAGCTTGAGGCCTGGTGGTGGACGTGGCGGCGGAAGCAGGCTTCTCGGTCACTCCTCATCATCTTCATCCTCTACTTCTCACTCTGATCTTCCTCTGTTGCGTCCCCATGGCGCTTCTCTTTCTTCTTTCTCTCTCAAGGAATGGAAGTTAAGATCCATAAGACAAAGGAGAAACCTGAAGTTGAATGTCCTGATTCTTGGTGGGTGCACTCAGCTATGTGTACCTGCTGTAAATATGGACAGAAAGCAATATACTGGAGATTCACGGTTTGAAGGTCGTGAGCGTGTGCGATATACCAGAGAACAGCTTTTACAGCTTAGAGAGGCTGTCGAGGTCCCTGACGATATTCTAAAGATTAAACAAGACATAGAAGCTGAACTTTTCGGTGAAGATCAAAGTTGGGGCCGTGCTGAAAGCAATCCTCCACATCAATTACAAAATCGATATTCTGAGCCAGATAACCGTGACTGGCGTGGTCGTTCTGGACAACTTCCTCCTAATCCAGATGAGAGGTCTTGGGAAAACCTCAGAGATAACAGGGAGCTTGGTAATAGATTTGACTCTAGAAACCAGGATGCTAGTCAGGTTAATCGCCAAGATCAACTTAATTCTCAGTTTGCAAGGGCACAGATTTCTTCTAATCAAGGGGGAGGATCTGTGCCTACTCTAGCCAAGGCTGAAGTTCCATGGTCAGCTAGAAGGGGAAGCCTCTCTGAGAAGGATCGCGTCCTGAAGACTGTAAAAGGCATACTAAATAAGTTGACTCCTGAGAAGTTTGATCTCTTGAAGGGTCAATTAATCGATTCTGGCATTACATCAGCTGACATCTTGAAGGGTGTCATTTCACTTATATTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTGTGCTCTGATCTTAATGAGAAGCTTCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACTTTTAAGAGAGTACTCTTGAATATTTGCCAGGAGGCTTTTGAAGGTGCTTACAATATGAGGGAGGAAATAAAACAGATGACTGCCCCTGAGCAGGAGATGGAGCGTACAGACAAGGAAAGACTGATCAAGCTTCGCACCCTTGGAAATATCCGTTTAATTGGTGAGCTTTTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCCCCAGACAGCAAGGCTTGTCCAGTTGAGGAAAATGTTGAAGCCATTTGTCAGTTTTTCAATACTATTGGTAAGCAGCTTGATGAAAGTCCAAAATCGCGGCGAATAAATGATATGTATTTTAGCCGTTTGAAAGAACTATGCACAAACCCCCAACTTGTACCACGGCTCAGGTTCATGCTTCGGGATGTTCTAGATTTGCGTGCAAATAACTGGGTTCCTAGACGCGAAGAGATGAAAGCCAAAACCATCACTGAAATTCATTCAGAGGCAGAAAAAAATCTTGGATTGCGCCCAGGTGCTACTGCTAATATTAGAAATGCCCGTGGAGGTGTTCAAGGAAATGTCGGCCCAGGGGGCTTCCCCATTGCTCGACCAGGTACAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGAATTGATAATGATAACTGGGAGATTCCTAGGACTAGATCTATGCCAAGAGGAGACTTGTCAAATAATCAAGCTTCAGGACGCAGCAACTCTTCTTTTCCTTCCAAGCCCACAACCTTGAATTCAAAATTTCTTCCTCAAGGTAGTGTTGGTATTATAAGTGGAAGAAGTAGTGCCCTTGTTCATGGAGGTGGTCCAGTTTCTGCTCGCCCATCAAACTTTGGTTCAGGTATTGAGGCTACACCTCAATTCTCTTCACCTGCTAAACCAGTTTCTGCTGTGTCCTCAGAGAAGCCACAGGCTCCAGCTGTAAAATTGAATCTTGATGATCTTCACCGCAAAACCGTCTCTCTTCTGGAAGAATATTTCAGTGTTCGGATTTTGGAAGAGGCATTACAATGTGTGGAGGAATTAAAATCTCCAGCTTACCACCCTGAGTTTGTTAAGGAAGCCATTTCTCTTGCACTTGATAAAAGCCCACCATGTGTTGAACCCGTTGCCAATCTACTTGAGTATCTCTTTATTAAGAAGATTCTTACAGCCAGAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTTTGCTGGATGACATTGGCATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGGAAACTAATTTTGGCTGGAGGGTTGGATTTTAAGGTGGTGGCAGAGATTCTCAAGAAAGTGGATGATGACCTGTTTCAGAGAGCAATATTTGACAGTGCAGTACGAGTAATTAGATCTGCCTCTGGGCAAGCTGTATTGGAATCACAAATATCTGATATTGAGGCCTGCCAGAGTCTGCTCAAGTGA 2487 0.4451 MQQGDPTVLSLRPGGGRGGGSRLLGHSSSSSSSTSHSDLPLLRPHGASLSSFSLKEWKLRSIRQRRNLKLNVLILGGCTQLCVPAVNMDRKQYTGDSRFEGRERVRYTREQLLQLREAVEVPDDILKIKQDIEAELFGEDQSWGRAESNPPHQLQNRYSEPDNRDWRGRSGQLPPNPDERSWENLRDNRELGNRFDSRNQDASQVNRQDQLNSQFARAQISSNQGGGSVPTLAKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPGGKEITFKRVLLNICQEAFEGAYNMREEIKQMTAPEQEMERTDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKACPVEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELCTNPQLVPRLRFMLRDVLDLRANNWVPRREEMKAKTITEIHSEAEKNLGLRPGATANIRNARGGVQGNVGPGGFPIARPGTGGLMPGMPGTRKMPGMPGIDNDNWEIPRTRSMPRGDLSNNQASGRSNSSFPSKPTTLNSKFLPQGSVGIISGRSSALVHGGGPVSARPSNFGSGIEATPQFSSPAKPVSAVSSEKPQAPAVKLNLDDLHRKTVSLLEEYFSVRILEEALQCVEELKSPAYHPEFVKEAISLALDKSPPCVEPVANLLEYLFIKKILTARDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVAEILKKVDDDLFQRAIFDSAVRVIRSASGQAVLESQISDIEACQSLLK. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03598 828 MobiDBLite consensus disorder prediction 1 42 - -
Seca5g03598 828 Pfam MIF4G domain 253 479 IPR003890 GO:0003723|GO:0005515
Seca5g03598 828 FunFam Eukaryotic translation initiation factor isoform 4G-2 657 818 - -
Seca5g03598 828 Pfam MA3 domain 665 776 IPR003891 -
Seca5g03598 828 MobiDBLite consensus disorder prediction 140 183 - -
Seca5g03598 828 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 77 825 IPR045208 GO:0003743
Seca5g03598 828 MobiDBLite consensus disorder prediction 627 646 - -
Seca5g03598 828 MobiDBLite consensus disorder prediction 569 597 - -
Seca5g03598 828 SUPERFAMILY ARM repeat 247 482 IPR016024 -
Seca5g03598 828 MobiDBLite consensus disorder prediction 23 39 - -
Seca5g03598 828 Gene3D - 244 480 - -
Seca5g03598 828 SMART ma3_7 664 776 IPR003891 -
Seca5g03598 828 FunFam Eukaryotic translation initiation factor isoform 4G-2 244 480 - -
Seca5g03598 828 ProSiteProfiles MI domain profile. 663 785 IPR003891 -
Seca5g03598 828 SMART if4_15 253 479 IPR003890 GO:0003723|GO:0005515
Seca5g03598 828 SUPERFAMILY ARM repeat 660 807 IPR016024 -
Seca5g03598 828 Gene3D - 657 824 - -
Seca5g03598 828 MobiDBLite consensus disorder prediction 552 597 - -
Seca5g03598 828 MobiDBLite consensus disorder prediction 616 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03598 Seca-Chr5 92990803 92997447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03598 1 826 Eukaryotic Initiation Factors Gene Family AT5G57870 63.297 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03598 K03260 - gmx:100800438 1209.9