Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03596 ATGGAAGCCAGCGCTGGACTGGTCGCTGGATCACACAAACGCAATGAACTTGTGGTCATTCATGGCCATGAAGAGCCCAAGCCTTTGAAGAACTTGGATGGACAGGTGTGTGAGATTTGTGGTGATGGTGTAGGACTCACTGTGGATGGAGACTTGTTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCCGGCCATGTTATGAGTATGAAAGAAGAGAAGGAAGCCAGAATTGTCCACAGTGCAAGACCAGATACAAGCGCCTCAAAGGGAGCCCGCGAGTGGAGGGAGATGATGATGAAGAGGACGTGGATGATATTGAGCATGAATTCAATATTGAGGACCAAAAGAACAAGCATGCTCATGTTGCAGAAGCCATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCTCAGTTCCCACCTGTAATTTCTGGTGGTCGTTCTAGACCTGTAAGTGGGGAGTTCCCAATAGGATCTCATGGTTATGGGGAGCAGATGTTATCTTCTTCATTGCATAAACGAGTGCATCCATATCCTGTGTCTGAACCTGGAAGTGCAATATGGGATGAAAAGAAAGAGGATGGATGGAAAGATAGAATGGATGACTGGAAATTACAGCAAGGCAATTTGGGACCTGAACCTGATGAAGATCCAGATGCAACCATGCTAGATGAAGCAAGACAGCCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATATAGGATGGTGATTGTGGCACGGCTTGTTATTCTTGCTATGTTCCTTAGATACCGAATTTTGAACCCAGTACATGATGCACTGGGGCTATGGCTAACCTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTTGATCAGTTTCCTAAATGGTTTCCCATTGATAGAGAGACCTACCTTGATCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCTAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCACCTCTAGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTACATTTCTGATGATGGTGCTTCAATGTGTACATTTGAATCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAATGGGTACCATTTTGTAAGAAATTTTCTATTGAACCTCGTGCACCTGAGATGTACTTCAGTGAGAAGATTGACTACCTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAACGTAGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAAGTTCCTCCAGGAGGGTGGATCATGCAAGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCAGGGATGATTCAAGTTTTTCTTGGCAACAATGGTGGTCTTGATACTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTTCAACATCACAAGAAAGCTGGTGCTATGAATGCTCTGGTTCGGGTCTCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTATGTCAATAACAGCAAGGCAGCCCGAGAAGCCATGTGCTTTTTGATGGATCCTCAAACTGGGAAGAAAGTCTGCTATGTCCAGTTTCCTCAGAGATTTGATGGTATTGATACTCATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGGACAGGATGTGTTTTTAGGAGGCAAGCTTTGTATGGCTATAATCCTCCTAAGGGTCCCAAACGTCCAAAAATGGTAAGCTGTGATTGCTGCCCTTGTTTTGGAAGCCGCAGGAAGAATAAGCATGCAAAGAGTGATGCAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGCTGCTAATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTGTTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCAGCCCTGCTTAAAGAAGCCATTCATGTAATTAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGGTTGGTTGGATTTATGGATCTATCACAGAAGATATTCTGACAGGTTTTAAGATGCACTGCCGGGGTTGGAGGTCCATTTACTGCATGCCAAAGAGACCTGCATTCAAGGGTACAGCTCCTATCAACTTGTCAGATCGACTCAACCAAGTTCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTTTTCAGTAACCATTGCCCTTTATGGTATGGCTACAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCTAACACAACTGTCTACCCTTTCACCTCCATACCTCTAGTTGCCTACTGTGTTCTTCCTGCAGTTTGCTTGCTCACTGACAAATTCATCATGCCACCGATAAGCACTTTTGCTGGTTTGTACTTTGTTGCTCTTTTCTCTTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTGTCTCAGCACATCTGTTTGCAGTTATACAAGGTCTTCTCAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCAAAGGCAGCAGATGATGAGGATTTTGGAGAATTATATACCTTTAAGTGGACTACACTCCTAATTCCTCCAACTACTATCTTAATCATCAACATGGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGCTACCAATCATGGGGACCACTGTTTGGAAAACTCTTCTTTTCCTTTTGGGTGATTGTACATCTGTATCCATTCCTTAAAGGTTTGATGGGTAGGCAAAACCGCACTCCCACTATTGTTGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTACTTTGGGTGAGAATTGATCCATTTGTTCTAAAGACTAAGGGACCTGATACCAAGATGTGGTCTAATAACAGCAATGATCTTGTGATCATCCAAGGACATGAGGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTTTGTGAGATATGTGGTGATTCTGTGGGACTTACAGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCAGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGCCCTCAGTGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTAGATGATATTGAACATGAATTTAAAATGCTGCAAGGGAAGATAAACCATGGAGATGATCATGATAATGATAAATCAACAAAGGTCAGTCTGCAGGTGAATGGGGAGCTTCCCACATCTTCTCACAGCATTGGAGAACCTGGTGGTGCAAAAGTGGATGGCAAGGAGAAAACAGATGACTGGAAGTTGTCCCAAGGCAATCTGTGCCCTGAAACTGATGCCTCAGTTGATCCTGAAAAGGGCATGAAAGATGAAACTAGACAGCCACTCTCAAGGAAAGTACCAATCCCTTCAGGCAAACTCAGTCCTTATAGAATGATGGTTGTGGCTCGGCTCCTCCTCCTAATACTCTTCATTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTCTGGTTCATATCTGTAATGTGTGAAATCTGGCTTGCATTGTCATGGCTAGTTGATCAGCTTCCCAAATGGTTTCCCATCAATCGTGAGACATACCTTGATCGTCTTTCAATCAGGTTTGAACCGGAAAACAAACCCAATATGCTTTCTCCAATAGATATCTTTGTCACAACAATAGATCCAATCAAGGAACCCCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTATCCAGCTCACAAGATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCTCAAAAGTGGGTACCTTTCTGCAAAAAATTCAATGCAGAACCTAGAGCCCCAGAGAAGTACTTTTCTGAGAAGATAGATTTTCTGAAGGATAAGCTTCAGTCCACATATGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCCTGAGAGTTCCCCTAGAAGGATGGACTATGAAAGATGAGACACCATGGCCAGGGAACAATACAAAAGATCATCCAGGTATGATACAAATCCTTCTTGGTCATAATGGAGGCCATGAAGGTAATGACCTTCCTTGTCTTGTCTACATGTCTCGAGAGAAAAGGCCTGCATTTCAACACCACAGCAAAGCTGGTGCAATCAATGCCTTGCTTCGTGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTCCTGAACTTGGACTGCAATCATTATGTGAATAACAGCAAAATTGTTAGAGAAGCTATGTGTTTCTTTATGGATATACAACTAGGGAATAGCATTGGCTTTGTCCAGTTTCCTCTAAGATTTGACAGCCTTGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTTTGTTGGTTCAGGATGTATCTTCAGAAGGAAAGCTTTATATGGCTTTGATCCTCCAAAGGCTTCAAAACGCCCACGAATAGTACAAGTGCACTCAAAACAGGATGAAAATGGAGAAGATGCAAGTCTAACAGCAGCAACAGATGAAGACATGGAGCTTTTGAAGTCACAGATGAATGATGAAAGTAAATTTGGAAAGTCTACACTTTTCATGAATTCTTCATTAACAGAAGAGGGTGGTGCTGATTCTTCTTCAACTCAGGAAGCCCTGCTCAAAGAAGCCATTCATGTCATGAGTAGCAGATACGAAGACAGAACTCTTTGGGGATACGAGGTGGGTTTGAGCTATGGATCTATAGCAACAGATATTCTGACAAGTTTCAAGATGCACACTCGTGGTTGGAGATCTGTATACTGCATGCCAAAGAGACCTGCATTCAGGGGTACAGCTCCTATCAACCTTACAGAAAGACTTAACCAGGTGCTTAGATGGGCAGTAGGATCACTTGAGATTCTATTCAGCCGCCATTGCCCACTATGGTATGGATTCAATGAAGGAAGACTCAAGGGGCTCCAGAGGATTGCCTATATTAACAGCACTGTCTACCCTTTCAGCTCAATTCCCCTCCTCATGTATTGCCTTGTTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTGGGAACTTTTGCAAGTCTAATCTTCACTGCCCTCTTCATCTCAATCTTTGCATCTGCTATTCTTGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAATCAGCAATTTTGGGTCATTGGCAGTGTGTCTGCAAACCTCTTTTCCATTCTACAAGGCCTAATGGGAGCCCTGGGTAAATTTAATGCAAACTTCAGTGTTGTATCAAAGGCACCAGATGATGTGGAGTTTTGTGAATTGTACACCATTAGATGGACTGCATTACTAATACCTCCAACCACAATCATAATAATCAACCTCATTGGTATTGTAGCTGGGTTCACAGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCACTGCTTGGGAAGCTCTTCTTTTCTTTATGGGTTATTGCTCACTTGTACCCATTCCTTAAAGGTCTGATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTCCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGAGTTGACCCTTTCGTGTTGAAAACTAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 6021 0.431 MEASAGLVAGSHKRNELVVIHGHEEPKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEDQKNKHAHVAEAMLHGKMSYGRGPEDDENAQFPPVISGGRSRPVSGEFPIGSHGYGEQMLSSSLHKRVHPYPVSEPGSAIWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDATMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAMFLRYRILNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTKDHPGMIQVFLGNNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRRKNKHAKSDANGEAASLKGMDDDKELLMSQMNFEKKFGQSSVFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLEVGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPLWYGYKEKKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINMVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKMWSNNSNDLVIIQGHEEPKPVKNLDGQLCEICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMLQGKINHGDDHDNDKSTKVSLQVNGELPTSSHSIGEPGGAKVDGKEKTDDWKLSQGNLCPETDASVDPEKGMKDETRQPLSRKVPIPSGKLSPYRMMVVARLLLLILFIQYRIFHPVPDAIGLWFISVMCEIWLALSWLVDQLPKWFPINRETYLDRLSIRFEPENKPNMLSPIDIFVTTIDPIKEPPLVTANTVLSILALDYPAHKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKKFNAEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSLRVPLEGWTMKDETPWPGNNTKDHPGMIQILLGHNGGHEGNDLPCLVYMSREKRPAFQHHSKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKIVREAMCFFMDIQLGNSIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAFVGSGCIFRRKALYGFDPPKASKRPRIVQVHSKQDENGEDASLTAATDEDMELLKSQMNDESKFGKSTLFMNSSLTEEGGADSSSTQEALLKEAIHVMSSRYEDRTLWGYEVGLSYGSIATDILTSFKMHTRGWRSVYCMPKRPAFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPLWYGFNEGRLKGLQRIAYINSTVYPFSSIPLLMYCLVPAICLLTDKFITPSVGTFASLIFTALFISIFASAILELRWSGVSLEEWWRNQQFWVIGSVSANLFSILQGLMGALGKFNANFSVVSKAPDDVEFCELYTIRWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGALLGKLFFSLWVIAHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC. 2007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03596 2006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1045 1135 IPR013083 -
Seca5g03596 2006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Seca5g03596 2006 FunFam Cellulose synthase 19 110 - -
Seca5g03596 2006 FunFam Cellulose synthase 448 622 - -
Seca5g03596 2006 Pfam Cellulose synthase 331 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca5g03596 2006 Pfam Cellulose synthase 1312 2000 IPR005150 GO:0016020|GO:0016760|GO:0030244
Seca5g03596 2006 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1214 1973 - -
Seca5g03596 2006 SMART ring_2 37 82 IPR001841 -
Seca5g03596 2006 SMART ring_2 1062 1107 IPR001841 -
Seca5g03596 2006 CDD mRING-HC-C4C4_CesA 35 85 - -
Seca5g03596 2006 MobiDBLite consensus disorder prediction 1164 1222 - -
Seca5g03596 2006 SUPERFAMILY RING/U-box 21 107 - -
Seca5g03596 2006 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1324 1822 IPR029044 -
Seca5g03596 2006 MobiDBLite consensus disorder prediction 1606 1630 - -
Seca5g03596 2006 MobiDBLite consensus disorder prediction 1204 1218 - -
Seca5g03596 2006 Coils Coil 1410 1430 - -
Seca5g03596 2006 SUPERFAMILY Nucleotide-diphospho-sugar transferases 344 809 IPR029044 -
Seca5g03596 2006 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1469 1605 IPR029044 -
Seca5g03596 2006 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 472 622 IPR029044 -
Seca5g03596 2006 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Seca5g03596 2006 Pfam Zinc-binding RING-finger 1052 1129 IPR027934 -
Seca5g03596 2006 Coils Coil 429 449 - -
Seca5g03596 2006 SMART PHD_3 1061 1108 IPR001965 -
Seca5g03596 2006 SMART PHD_3 36 83 IPR001965 -
Seca5g03596 2006 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Seca5g03596 2006 FunFam Cellulose synthase 1044 1135 - -
Seca5g03596 2006 CDD mRING-HC-C4C4_CesA 1060 1110 - -
Seca5g03596 2006 SUPERFAMILY RING/U-box 1047 1130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03596 Seca-Chr5 92968694 92984052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03596 1036 2006 Cell Wall Biosynthesis AT5G17420 64.769 0.0 1376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03596 K10999 - gmx:100815436 2052.33