Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03592 ATGGATATGTACATTCGTGTTAAGCGTGTTAAGACAACATACTTCATCCGGTGCAAGCCATCTGATAAAATTCTTGACATAAAGCAGAAGTTGCAAGAACTCGTTGATCAACCAGCTAATAATCAACGGTTAATTCTACCTGCTACAGGGGAAGTATTAGAGGACAATAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCTGTTGTCGCACTGACCTTGAGGAAAGGTAAAGGGTATATCATTATCCCTTTCCTTGCTGCCTATTCAGTTTTGTTTCTTCCTTCACTGGTTGTGTGCAGAGTCCTATTGTCTATCTTGTTCTTTGAAGGATCCTGCAGTTTTGATAATAGAATTAGAAGGTCATTCTGGATTTTTGTTGGATTAGTTTTGAATAATTACATTCCCAGTGGGGAATTGCAATAA 426 0.3826 MDMYIRVKRVKTTYFIRCKPSDKILDIKQKLQELVDQPANNQRLILPATGEVLEDNKTLADQKVENDAVVALTLRKGKGYIIIPFLAAYSVLFLPSLVVCRVLLSILFFEGSCSFDNRIRRSFWIFVGLVLNNYIPSGELQ. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03592 141 Pfam Ubiquitin family 6 76 IPR000626 GO:0005515
Seca5g03592 141 SMART ubq_7 3 75 IPR000626 GO:0005515
Seca5g03592 141 PANTHER OS03G0364000 PROTEIN 1 78 - -
Seca5g03592 141 CDD Ubl_ubiquitin_like 5 72 - -
Seca5g03592 141 Gene3D - 1 86 - -
Seca5g03592 141 ProSiteProfiles Ubiquitin domain profile. 3 79 IPR000626 GO:0005515
Seca5g03592 141 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03592 Seca-Chr5 92915154 92919006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03592 13 120 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 29.825 2.22e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03592 K03873 - gmx:100499885 145.206