Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03569 ATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAATCGCAGAACAAGAAAGGAAGACAAGCAAATTAAAAGCAAAAGAATCATCCATGTAACTAATTATGGAAGGTGTGTTTCAGGTGCTTATGACGATGAAGAGGCTGCAGCACATGCTTATGATCTAGCCGCATTGAAATATTGGGGTCCAGACACCATCCTTAACTTTCCGCTATCAACCTACCAGAATGAACTGAAAGAAATGGAAGGTCAATCAAGGGAGGAGTATATTGGATCATTAAGGAGGAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGCATTGGCAGGGTTTTTGGCAACAAATATCTTTACCTCGGCACTTATGCTACACAAGAAGAAGCTGCCACAGCATATGATATGGCAGCTATTGAATATCGTGGACTCAATGCCGTTACCAATTTTGACCTTAGCCGTTACATTAAATGGCTTAAGCCTAATCACAATCACAATAACGATAACAATAACACAGTTAGCACTAATCTTAATGATTCATCTAATTCAATTAGTAACACCAGCTTCATCCCAAACCCTAATCAAGAGCAAGGACTTAAATTCTTCCACAACCAAGAGTCATCATTTACCAATGGAGAAGAAGTGATGAGTACTATTGCAATGACACAGCCTCGTCCAACTACTGCCACGTCAGCCCTAGGACTTTTGCTTCAATCATCCAAGTTTAAGGAGATGATGGAGATGACCTCCGCCGTGGATTTGTCGACCCCGCCGGAGTTGGAGTTGCCGGCGTGCACATTTCCTGATGACATTCAAACATACTTTGAGTGTGAAGATTCAAGCAAATATGGAGAAGGGGGTGATGATATGATTTTCAGTGAGCTCAACTCTTTTGTGCCCCCTATATTCCATTGTGATGACTTTGAGGGCTTGAAGGTCTAG 978 0.4223 MKLICGTRIAGMNRRTRKEDKQIKSKRIIHVTNYGRCVSGAYDDEEAAAHAYDLAALKYWGPDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNHNNDNNNTVSTNLNDSSNSISNTSFIPNPNQEQGLKFFHNQESSFTNGEEVMSTIAMTQPRPTTATSALGLLLQSSKFKEMMEMTSAVDLSTPPELELPACTFPDDIQTYFECEDSSKYGEGGDDMIFSELNSFVPPIFHCDDFEGLKV. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03569 325 ProSiteProfiles AP2/ERF domain profile. 8 69 IPR001471 GO:0003700|GO:0006355
Seca5g03569 325 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 32 222 - -
Seca5g03569 325 SUPERFAMILY DNA-binding domain 33 71 IPR016177 GO:0003677
Seca5g03569 325 SUPERFAMILY DNA-binding domain 104 165 IPR016177 GO:0003677
Seca5g03569 325 Gene3D AP2/ERF domain 12 71 IPR036955 GO:0003700|GO:0006355
Seca5g03569 325 Gene3D AP2/ERF domain 104 165 IPR036955 GO:0003700|GO:0006355
Seca5g03569 325 Pfam AP2 domain 104 155 IPR001471 GO:0003700|GO:0006355
Seca5g03569 325 FunFam AP2-like ethylene-responsive transcription factor 104 165 - -
Seca5g03569 325 ProSiteProfiles AP2/ERF domain profile. 105 163 IPR001471 GO:0003700|GO:0006355
Seca5g03569 325 MobiDBLite consensus disorder prediction 174 202 - -
Seca5g03569 325 CDD AP2 104 165 IPR001471 GO:0003700|GO:0006355
Seca5g03569 325 SMART rav1_2 15 75 IPR001471 GO:0003700|GO:0006355
Seca5g03569 325 SMART rav1_2 105 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03569 Seca-Chr5 92641062 92644355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03569 40 316 AP2-EREBP Transcription Factor Family AT1G79700 54.874 4.61e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca5g03569 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03569 K09285 - gmx:100804555 431.024