Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03565 ATGCCAGATTTGGGGAACCTATCTCTCTCCGCCACTCTCACGCTCTCTCCCTGCTCCGCCGTCAAACCCACCGATGTCGCCGATTCCGCCGTCAAAACCCTACACAACGGTTACGGCTCCGATGATGGCGGTGATGCTCGGGTTCTGAAGCGGAGTCGCGGTTCCCTTGATCGGGTCAAGAAGGCAGGCAATTACAAAGGCCTGGAGGATCGCCTCAAAGATCCTTTCACTTTTCCCTTTCTTTCTGGTGCTCCAAAAATGGTTGAATGTTCCTTTTGCCACCATTCTGTGTACCCTGGGGAGGAGCTGTTATGTTCTGTTCGTGGATGTGACGCACGTTACCATACGGAATGCGCAAAAGAAGCCGTTGGGGCTTCAAATCTGAAAAAATTCAAGTGTCCACAGCATGTATGCTTCATTTGCAAACAAAAATTGCACTTGAGGTGTGTGCGTTGCACAATGGCATTCCATAATAAATGTGCACCATGGCCAGATGCGGTGATCCCTCTGAAAGATCATCCTGGGCAAGCTGTTTGTTGGAGGCATCCTCCTGATTGGCGCCTGGATAGAAAGCCTGATACTTCAACAAGTGATATTTCGGAAGTATTTTGTCGCTTGCCTCTTCCATATATCAATGAGGAGTTCAAGATTGACTTCACTTGGAAAGACATGGATAGTAAGATGGAGCCACCGCCATATATACACATAAGACGCAATGTATACCTAGTGAAGAAGAAACGTAGTGTTGTAGATGATGGGGCAGGGTGCACCAGTTGCAGATCTACGTGCTCTGATGATTGTGTGTGCAGGGTTCAATGTATAAGCTGCTCAAAGGCTTGTCGCTGCTCAGAAAATTGCAATAACCGGCCATTTCGCAAAGAGAAAAAGATCAGGATTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCCGCTGAAGCAATCAATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTTATGTGAAAAAAGACTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGAAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATATATCCCGCTTTTTAAACCATAGCTGCGATCCCAACTGTATTTTGGAAAAGTGGTCAGTGTCAAAAACTCTACCGCACTTATTCTTGACTGCTTTATTTTCTTACTTTTCAAGGATTCGATACATATATTATTTCCTAGTGGACCAAGTTGCTGTTAAAAATTGGGATACGGTATAA 1278 0.4437 MPDLGNLSLSATLTLSPCSAVKPTDVADSAVKTLHNGYGSDDGGDARVLKRSRGSLDRVKKAGNYKGLEDRLKDPFTFPFLSGAPKMVECSFCHHSVYPGEELLCSVRGCDARYHTECAKEAVGASNLKKFKCPQHVCFICKQKLHLRCVRCTMAFHNKCAPWPDAVIPLKDHPGQAVCWRHPPDWRLDRKPDTSTSDISEVFCRLPLPYINEEFKIDFTWKDMDSKMEPPPYIHIRRNVYLVKKKRSVVDDGAGCTSCRSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIRIVKTELCGWGVEAAEAINKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNISRFLNHSCDPNCILEKWSVSKTLPHLFLTALFSYFSRIRYIYYFLVDQVAVKNWDTV. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03565 425 ProSiteProfiles SET domain profile. 295 425 IPR001214 GO:0005515
Seca5g03565 425 Pfam SET domain 306 398 IPR001214 GO:0005515
Seca5g03565 425 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 387 IPR025787 -
Seca5g03565 425 SMART PHD_3 89 137 IPR001965 -
Seca5g03565 425 ProSiteProfiles AWS domain profile. 251 295 IPR006560 GO:0005634|GO:0042054
Seca5g03565 425 SMART set_7 295 409 IPR001214 GO:0005515
Seca5g03565 425 SUPERFAMILY SET domain 216 399 IPR046341 -
Seca5g03565 425 SUPERFAMILY FYVE/PHD zinc finger 66 137 IPR011011 -
Seca5g03565 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 185 IPR013083 -
Seca5g03565 425 Gene3D SET domain 211 404 IPR046341 -
Seca5g03565 425 PANTHER SET DOMAIN PROTEINS 63 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03565 Seca-Chr5 92622411 92627861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03565 276 398 C2H2 Transcription Factor Family AT2G23740 37.410 3.61e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca5g03565 SET 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03565 - - pvu:PHAVU_009G195400g 674.085