Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03562 ATGTGGTTAAACCAACATGCTTGCTGTCATTGTTCCATAATTATGGCTGCCAATTGGGTTCTTCTTCTCCTTCTCTTTCTTTTTAGTGCTGCAGTTCTTTGTTCCTCTTCCGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGCATAAGAGCAGAACTGAATGATCCACACGGTGTTCTGAGCAACTGGGATGAATTCTCCGTCGACCCTTGTAGTTGGGCTATGATCACTTGTTCCTCTGATTTCCTTGTTATAGGCCTAGGAGCACCAAGTCAATCTCTCTCTGGAACTTTGTCTCCGGCAATTGGAAATCTCACCAATCTTCGACAAGTGTTATTACAGAACAACAACATCTCTGGCAAAATCCCATCAGAGCTTGGTGTGCTTCCCAAGCTTCAGACTTTAGATCTTTCCAATAATAGGTTCTCTGGGGTGATTCCTGGGTCTCTCGGTCAGTTGAATAGTCTCCAGTATCTGAGGCTGAACAACAATAGCTTGTCTGGGCCATTTCCTGTGTCACTAGCCAAAATCCCACAACTTGCCTTTTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAGGTTTCCAGCTAGATCATTCAATGTTGTGGGAAACCCATTAGTTTGTGGGAGCAGCTCTACTGAAGGTTGCTCTGGTTCAGCAACCTTCATGCCCATGTCTTTCTCTCTAACATCATCACAAGGGAAAAACAAGTCCAAGAAACTAGCAATTGTGCTTGGGATCAGCCTTGGTTGTGTTTGTCTCGTATTTCTGTTTTTTGGGATTTTTTGGTATAGAAAGAAATGGCAGAACCAAGCAATCCTGTACCTTGGTGATTATCATCTGGAAGAGGGCCTTGTTAGCTTGGGAAATCTGAAACATTTCACTTTCAGAGAGCTCCAAACTGCAACAGATAATTTCAGCTCCAAGAACTTACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAACTTGGTGATGGCACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGAAGTGCTGGTGAATCACAGTTCCGAACAGAAGTGGAGATGATCAGCTTAGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGTTGCTGATTTATCCTTTTATGTCTAATGGCAGTGTGGCCACCAGGCTTAAAGGTAAACCCGCTTTAGATTGGAACACAAGAAAGAGAATAGCAATTGGAGCTGCCAGAGGTCTTCTCTATCTTCATGAGCAATGTGATCCTAAGATAATTCACAGAGATGTGAAGGCTGCTAATGTGCTTCTGGATGACTATTGTGAAGCTGTTGTTGGCGATTTTGGCCTTGCAAAGCTCCTTGACCATGCCGACTCCCATGTCACTACTGCTGTCCGTGGCACTGTTGGGCACATTGCACCAGAGTACCTCTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACTGGAATGACAGCTCTAGAGTTTGGAAAAACGCTTAATCAAAAAGGAGCAATGCTAGAGTGGGTCAGGAAAATACAGCATGAAAAGAAAGTTGAAGTGTTGGTGGACAAGGAACTAGGGAACAACTATGACAGAATAGAAGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAATATTTACCAGCCCACCGTCCCAAAATGTCTGAAGTGGTTCGAATGCTTGAAGGTGATGGTCTAGCTGAGAAGTGGGCAGCATCACATAATCATGGTGGTCTCAGTTTGCAAACCACCCTTAACAGCAACTGTAGCAAAAAAGGTTCATCCCACCCTACCACTGCTTCAAACCATGATGACAATAATGCTCATGATCGTTCCAGCACGTTTGGCATGACAATGGATGATGACGATGGTGATGAACATTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1977 0.4426 MWLNQHACCHCSIIMAANWVLLLLLFLFSAAVLCSSSEPRNHEVEALMSIRAELNDPHGVLSNWDEFSVDPCSWAMITCSSDFLVIGLGAPSQSLSGTLSPAIGNLTNLRQVLLQNNNISGKIPSELGVLPKLQTLDLSNNRFSGVIPGSLGQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPRFPARSFNVVGNPLVCGSSSTEGCSGSATFMPMSFSLTSSQGKNKSKKLAIVLGISLGCVCLVFLFFGIFWYRKKWQNQAILYLGDYHLEEGLVSLGNLKHFTFRELQTATDNFSSKNLLGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFRTEVEMISLAVHRNLLRLIGYCATPNEKLLIYPFMSNGSVATRLKGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQHEKKVEVLVDKELGNNYDRIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHNHGGLSLQTTLNSNCSKKGSSHPTTASNHDDNNAHDRSSTFGMTMDDDDGDEHSLDSYAMELSGPR. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03562 658 FunFam Somatic embryogenesis receptor-like kinase 1 387 598 - -
Seca5g03562 658 Gene3D Ribonuclease Inhibitor 40 222 IPR032675 -
Seca5g03562 658 FunFam Somatic embryogenesis receptor kinase 1 282 386 - -
Seca5g03562 658 ProSiteProfiles Protein kinase domain profile. 310 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03562 658 SMART serkin_6 310 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03562 658 SMART LRR_typ_2 130 153 IPR003591 -
Seca5g03562 658 SMART LRR_typ_2 154 185 IPR003591 -
Seca5g03562 658 SMART LRR_typ_2 106 128 IPR003591 -
Seca5g03562 658 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Seca5g03562 658 SUPERFAMILY L domain-like 40 205 - -
Seca5g03562 658 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Seca5g03562 658 SUPERFAMILY Protein kinase-like (PK-like) 290 580 IPR011009 -
Seca5g03562 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Seca5g03562 658 MobiDBLite consensus disorder prediction 601 658 - -
Seca5g03562 658 MobiDBLite consensus disorder prediction 601 620 - -
Seca5g03562 658 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 590 - -
Seca5g03562 658 Gene3D Transferase(Phosphotransferase) domain 1 387 596 - -
Seca5g03562 658 Pfam Protein kinase domain 311 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03562 658 Gene3D Phosphorylase Kinase; domain 1 283 386 - -
Seca5g03562 658 PRINTS Leucine-rich repeat signature 178 191 - -
Seca5g03562 658 PRINTS Leucine-rich repeat signature 133 146 - -
Seca5g03562 658 FunFam Putative LRR receptor-like serine/threonine-protein kinase 40 222 - -
Seca5g03562 658 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Seca5g03562 658 MobiDBLite consensus disorder prediction 621 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03562 Seca-Chr5 92581822 92586887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03562 12 658 Receptor kinase-like Gene Family AT5G16000 63.595 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca5g03562 Pkinase 8.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03562 - - lja:Lj6g3v1048910.1 1132.86