Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03550 ATGTTGATAACGGTTAGGGAAGCTTCTTCTTCTCCCCTTTGTTTCTGGCTCAATCCTATCGTCGCAAAACGCTCTAAAACATTCAAAACTTCCATTTGCCAAGCCAGTTTTTCTGTCCAGAGAAGACCCAACAACACCAACCATTCATGGAATCCTGGGTATCTCTCTACCAGCTGTGAGGCAGCGAATTTTGATCCCTTGGGTATTAACACAGATTTGTCTTCTTCTCTGAGTTCTACCTGGAAAGATCTGGTATGCTTGTTTTCACAAACATTTGAGAGTTCTTCAAGTACCGAAAAGGAAAAACCTAACTCACCTCGAGGAGTGGCAGCTGCGATAGAGGATAGTTCAATTGATTTTGGTGACTTCTTTAAAGGTCCACTGCCAGGGAAGTTTCTCAAGCTTCTAGGGTTTCTTGCTTTGTCACGGCTTGGTGTGTACATACCTCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAACAGTTTGTTAAGCACTCTGGACTCATTTTCTGGTGGAGGTATTGGTAGGCTAGGGCTATGTTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAGTTGCAAGATCTTCAAAAAAGAGAAGGCGAGGCTGGAAGAAAGAAAATTCTTCAATACACTCGATATGCTTCAGTTGGATTTGCAATTGTACAGGCGATTGGCCAAGTTCTTTACCTACGTCCCTATGTTAATGACTTTTCTACAGAGTGGGTTCTTTCTTCTGTTATCTTATTGACACTTGGCTCTGTGTTTACAACGTACATCGGTGAACGAATTACTGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTCGGACATTTGCACAGGCATTTAATGATGCTAACTATGTTGGACTTGCTACCATCATTGTGTCCTTCTTTCTATTGGTAGTTGGTATTGTCTATGTTCAGGTAAATCTCATTTCAATTGTTAAACAAAGATGTATTTGA 1056 0.41 MLITVREASSSPLCFWLNPIVAKRSKTFKTSICQASFSVQRRPNNTNHSWNPGYLSTSCEAANFDPLGINTDLSSSLSSTWKDLVCLFSQTFESSSSTEKEKPNSPRGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGLCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQAFNDANYVGLATIIVSFFLLVVGIVYVQVNLISIVKQRCI. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03550 351 SUPERFAMILY Preprotein translocase SecY subunit 124 346 IPR023201 -
Seca5g03550 351 PRINTS Preprotein translocase SecY subunit signature 132 150 - -
Seca5g03550 351 PRINTS Preprotein translocase SecY subunit signature 224 247 - -
Seca5g03550 351 PRINTS Preprotein translocase SecY subunit signature 282 305 - -
Seca5g03550 351 PRINTS Preprotein translocase SecY subunit signature 182 202 - -
Seca5g03550 351 PRINTS Preprotein translocase SecY subunit signature 256 281 - -
Seca5g03550 351 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 124 328 IPR002208 GO:0015031|GO:0016020
Seca5g03550 351 ProSitePatterns Protein secY signature 2. 275 292 IPR030659 -
Seca5g03550 351 Gene3D SecY subunit domain 123 346 IPR023201 -
Seca5g03550 351 Pfam SecY 184 344 IPR002208 GO:0015031|GO:0016020
Seca5g03550 351 ProSitePatterns Protein secY signature 1. 183 202 IPR030659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03550 Seca-Chr5 92423414 92427323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03550 41 339 Chloroplast and Mitochondria Gene Families AT2G18710 81.063 1.43e-172 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03550 K10956 - gmx:100810430 534.258