Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03549 ATGGAGCTGAAAAAGGGAAAGCTTGTCAGGTTCTACTCTGATAGCAAAAAGCATAAACAACCACTGTGGGGAGCAACTGAACCACCAGCACTGGAAAAGTCATCGTCCATATACAAGGTTTCATCGTCTTCATTGCTTAAACCTAGCAATGTGCTTCCATTAGGGAAAAATAGAATTGGTGGATCTAAGGTATTCCCGGAGGACCATGAGCCATGGCGAAAAAGAATACTTGACCCGGGCAGTGAGATTGTGTTAAAATGGAACCGGGTGTTTATAGTGTCATGCTTGGTGGCCCTTTTTATTGATCCATTGTACTTTTATTTGCCTAGTGTAACTGAAAATACAAGGTCTTCATGTGTGAGGACAGACCTAACATTACGGATTGTTGTGACCTTTCTTCGCACTATTGCGGATCTTTTTTATCTGTTGCACCTGATAATTAAGTTCAGGACAGCATATGTGGCACCAAGTTCACGTGTATTTGGCAGGGGTGAACTTGTCATGGACCCCAAGAAAATTGCAAGGAGATATATCAGATCTGATTTCTTCATTGATTTTATTGCCACATTGCCTCTACCACAGATGGTCATCTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAAAACAATGCTCTTGCATTGATTGTTTTGCTTCAATATGTTCCAAGGTTATATTTGATTTTTCCACTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACAAAGACTGCCTGGGCAGGAGCTGCATATAATTTGCTATTGTATATGTTGGCTAGCCATGTTTTAGGGGCAGCTTGGTATCTTCTCTCTGTGGACCGATATACTACTTGTTTGAAATCCTTTTGCAAGAAGGAACATAGCCCGGAATCTTGCTTTCTTTACCTGGACTGCAGCTCTTTGGATATTGATCTGCGCAAGATATGGGCAAATAGTACAAATGTGTTTAACAGCTGTGATCCCAGTAATCAGATTGAGTTCAAGTTTGGGATATTTGAAAATGCAGTAAAAAAAGATGTTGTCTCTTCAAACTTTATCCCAAAATACTTGTATTGTTTATGGTGGGGGTTGCAGCAATTAAGTTCTTATGGACAGAACCTAGAAACAAGCACTTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAAGAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCAACTCGTGGTGTTGATGAAGAAACCATTCTACGTGCATTACCTGCTGATCTTCGTCGTGATATCCAACGCCACCTTTGCTTAGACCTTGTTAGACGGGTTCCCTTCTTCTCTCAGATGGATGATCAACTTCTTGATGCAATATGTGAGCGGCTGGTGTCTTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCTGTAACTGAAATGCTCTTTATTATTAGAGGTAGACTTGATAGTTCTACAACTAATGGCGGCCGGACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGTGAGGAACTACTTTCTTGGGCCTTACTTCCAAAATCAACCGTGAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTCGCTAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACATTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGTCGATATAAGAAAAGGATGTTTGCCAAAGACCTCAGTTTGAGGGAATCCCTTCCTTTGGAGGAGACAGTGGCCAGTGAGAGAGAACATGAGGAGGAATGTCCTGCTGGTTCAAACTCATCTCAGGCTAAATTGAACCTTGGTGTCACAATTCTTGCTTCAAGGTTTGCTGCTAACACACGAAGAGGAGCTCTGAAGATTAAAGATGACCTGCCTAAGTTACGGAAGCCAGAAGAACCTGACTTTTCCACTGAAGCTGATGATGATTAG 2163 0.4202 MELKKGKLVRFYSDSKKHKQPLWGATEPPALEKSSSIYKVSSSSLLKPSNVLPLGKNRIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFIDPLYFYLPSVTENTRSSCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYIRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCLKSFCKKEHSPESCFLYLDCSSLDIDLRKIWANSTNVFNSCDPSNQIEFKFGIFENAVKKDVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLKSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTVNLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMFAKDLSLRESLPLEETVASEREHEEECPAGSNSSQAKLNLGVTILASRFAANTRRGALKIKDDLPKLRKPEEPDFSTEADDD. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03549 720 CDD CAP_ED 484 615 IPR000595 -
Seca5g03549 720 Pfam Ion transport protein 87 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca5g03549 720 SUPERFAMILY cAMP-binding domain-like 414 606 IPR018490 -
Seca5g03549 720 FunFam Cyclic nucleotide-gated ion channel 1 482 600 - -
Seca5g03549 720 ProSiteProfiles cAMP/cGMP binding motif profile. 484 614 IPR000595 -
Seca5g03549 720 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Seca5g03549 720 Gene3D Jelly Rolls 482 602 IPR014710 -
Seca5g03549 720 Gene3D Helix hairpin bin 412 475 - -
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 262 272 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 397 406 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 353 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 447 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 PRINTS EAG/ELK/ERG potassium channel family signature 379 390 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca5g03549 720 SMART cnmp_10 484 615 IPR000595 -
Seca5g03549 720 Gene3D - 90 409 - -
Seca5g03549 720 SUPERFAMILY Voltage-gated potassium channels 81 406 - -
Seca5g03549 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 713 - -
Seca5g03549 720 Pfam Cyclic nucleotide-binding domain 507 595 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03549 Seca-Chr5 92416864 92423101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03549 1 719 Ion Channels AT4G30360 70.661 0.0 1037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03549 K05391 - gmx:100808425 1308.12