Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03545 ATGGGAATATTGTTCTGTGCCACCACCATTACTCTTTTGTTGCTCAATTTCCACATCCCAGAGACAATTTCCCAACAAGACTATCTAGACAACAAGCAGCTAGATTGTTATGACCCTTCAAACTCTACATTTGGCAATGTTTGCAACAACATCAGTTCTTGCCAATCTTACCTCACCTTCAAATCAAGCTCTCCTCAATACAACACTCCTGCTTCCATAGCTTACCTCTTGAACTCCACAGCCCCTATTATAGCCAAGGCCAACAACATCTCAGATGTGGACATAATCCCCACAGACACCATGATCACTGTCCCAGTCAATTGCACCTGTTCTGGTCACTACTACCAGTATAACGCTTCATACACTTTGAAGACTGAAGATGAAAACTACTTCACTCTTGCCAACAACACCTATGAGGCCCTCACAACATGTCAAGCACTTGCATCTCAGAACATATATGGACTCACCAACCTCACTGCAGGGCTTAACCTTCATGTTCCACTTAGGTGTGCTTGTCCCACATCAAAGCAAATGGAAAATGGGTTCAAGTATCTTCTTACTTACTTGGTCTCTGAAGGAGAATACCCTGAATTGATTGCTGAGCTTTTTGGGGTTGACACACCGAGTGTTTTGGATGCAAACAAGCTTTTTGATGAGTCTATTATCTACTATTTCACACCACTGATGGTGCCTCTAAGACATGAGCCACCTACAAAGATAAAAAGGATGGTATCACCACCACCATCACCATCACCATCACCACCACCTCCTAAAGCAAATCCAAGTAGGGATGGAAATTCAAGCTCTTCTAAGAAATGGGTTGTTGTTGGAATCAGTGTTGGAGTTGCATTGCCGCTTCTTATCACACTTCTTGTGCTGTTCTTATACTTTTGTTGCCACCAAAAGGCCAAGCCTTTGTTGTCTTCTGCAGCCACCAAAGAGAAGGTCTCAGTCTCAGTCTCAGATACCAACACAACTAACCAATTCCGATGTCTATCTTCTGAAGGGCTTCGCTATGCTATTGAATCCTTAACAGTTTACAACTTTGAGGAGCTGCAAAAAGCAACGAGCTTTTTCAGTGAAGCTAACAGAATTAAGGGTTCTGTTTACCGAGCATCCTTGAAGGGTGATGATGCTGCTGTTAAGATTCTCAAAGGTGATGTCTCTGGGGAGATCAACATTCTGAGGAGAATCAACCACACCAACATAATAAGGCTCTCTGGGTTTTGTGTACACAAAGGAAGCACTTATCTTGTCTATGAGTTTGCTGAAAATGGTTCTCTTGATGATTGGATTCATTCTAATAAGTGCCTAAATTCTATGACTCTGACTTGGAAGCAGAGAGTTCAGATTGCTCATGATGTAGCTGATGCTCTGAATTACCTTCACAACTATACTAACCCCCACATGTCCACAAGGATTTGA 1425 0.4246 MGILFCATTITLLLLNFHIPETISQQDYLDNKQLDCYDPSNSTFGNVCNNISSCQSYLTFKSSSPQYNTPASIAYLLNSTAPIIAKANNISDVDIIPTDTMITVPVNCTCSGHYYQYNASYTLKTEDENYFTLANNTYEALTTCQALASQNIYGLTNLTAGLNLHVPLRCACPTSKQMENGFKYLLTYLVSEGEYPELIAELFGVDTPSVLDANKLFDESIIYYFTPLMVPLRHEPPTKIKRMVSPPPSPSPSPPPPKANPSRDGNSSSSKKWVVVGISVGVALPLLITLLVLFLYFCCHQKAKPLLSSAATKEKVSVSVSDTNTTNQFRCLSSEGLRYAIESLTVYNFEELQKATSFFSEANRIKGSVYRASLKGDDAAVKILKGDVSGEINILRRINHTNIIRLSGFCVHKGSTYLVYEFAENGSLDDWIHSNKCLNSMTLTWKQRVQIAHDVADALNYLHNYTNPHMSTRI. 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03545 474 ProSiteProfiles Protein kinase domain profile. 355 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03545 474 Gene3D Transferase(Phosphotransferase) domain 1 337 474 - -
Seca5g03545 474 Pfam Mid2 like cell wall stress sensor 268 309 IPR007567 -
Seca5g03545 474 MobiDBLite consensus disorder prediction 239 267 - -
Seca5g03545 474 Pfam Protein tyrosine and serine/threonine kinase 378 467 IPR001245 GO:0004672|GO:0006468
Seca5g03545 474 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 470 - -
Seca5g03545 474 SUPERFAMILY Protein kinase-like (PK-like) 338 467 IPR011009 -
Seca5g03545 474 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03545 Seca-Chr5 92374420 92380333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03545 7 470 Receptor kinase-like Gene Family AT2G33580 49.588 1.22e-122 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca5g03545 PK_Tyr_Ser-Thr 8.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03545 - - tpra:123901277 660.218