Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03543 ATGGTGCTTGATTGGGCGGTGGGAAATGAAACGTGCCAAGAGGCCAAACAAAATGAGACAAGGTACGCGTGCAAAGCAGACAAGAGTGAATGTCTCAATTCAACCAACAGAATGGGATATCGTTGCAAATGCCTCTCGGGGTTTGAAGGAAACCCGTATCTCTATGATGGATGTCAAGACATCAAAGAATGCAACATGGAACCTAGCCCCTGCAGCGGAATATGCCACGAACTTGAAGGCAACTATACTTGTTCATGCCCGGAGGGATACGAAGTAGATGGGTATAGAAGTGGCATAGGTTGCTATCCCAAAGGCAAATCCAGGACGAAACTTGCACATATAATTGCAGTGGATTTTCTCTTAATTGCAGGTGGGAGCTTGGGTATATTGGCACTGCTTGTGGGAAGCTTGTACTTGTATTCCAAACTGAGAAAAGCAAAGCTCAATAAAATCAGACAAAAGTATTTTCAACAAAATGGCGGCATATTGTTAAAACAGCGAATTGCTGCACATCAAGGGTCCACAGAAAGAGCTACAATCTTCACTGCTCAAGAGATGAAGAAAGCCACCAACAACTATGATGAGGATAGAGTCATAGGTAAAGGGGGCCATGGAACAGTGTACAAAGGTGTTTTATCAGATAACAGAGTTGTTGCCATCAAGAAGACCAAGATTTCAAGTCAAACTGAGATTGAGCAATTCATCAACGAGGTACTTGTGCTTTCCCAAACCAACCACCGGAATATTGTGAAGCTCCTAGGTTGTTGTTTGGAGATAGAGGTTCCTCTTCTTGTTTATGAATTCATCACTAATGGGACACTTTCAGAACACATTCATGTTGAAGGTCAAGCCTCTCAACTTTCATGGCAAGTACGTTTGAGAGTTGCAGCTGAGACTGCAGAAGCCCTTGCATACTTGCACTCTGCTGCCTCTACACCAATCATACATAGAGATGTCAAAACTGAAAACATACTACTAGATGATAATCTCACAGCCAAAGTTTCTGATTTTGGAGCTTCAAAGCTTATTCCTATTAATAAAACACAATTAACAACCTTAGTGCAGGGTACATTGGGTTATCTTGATCCTGAATACTTCCAATCAAGTCAGTTAACAGAGAAGAGTGATGTCTACAGTTTTGGGGTTGTCTTGGCAGAGCTATTGACAAGCATGAAGGCACTTTCATTCATGAGGCCTGAGAGTGATAGAAATCTATCTAACTACTTTGTTTCTTTGCTGAGTGAGGGTCGCTTGCCTCAAATCCTTGACAACAACATAGTAAATGATGCAAATTTTGAGCAAATAATGGAAGTGGCTTATCTTGTGAAAAGGTGTCTTATGCTTAAGGGAGAGGAAAGACCAACTATGAAAGAAGTTGCAATGGAATTGGAGAGAATAAGGACTGTGGAAAAACTTTCATCAACTGCAACCAATTTGTCCTTGGAAGAAACTGAGTACTCCTTCAGAGTACCAAGGTCCCCCTACACCACTGATGGTAGACGGGGCAGTGGTGGCAGCAGCATAATTACTGGGGTTGATAGTATTCAAACCCAGGTTTTGGAGCCACTAGATGAGGGACGATAA 1584 0.4223 MVLDWAVGNETCQEAKQNETRYACKADKSECLNSTNRMGYRCKCLSGFEGNPYLYDGCQDIKECNMEPSPCSGICHELEGNYTCSCPEGYEVDGYRSGIGCYPKGKSRTKLAHIIAVDFLLIAGGSLGILALLVGSLYLYSKLRKAKLNKIRQKYFQQNGGILLKQRIAAHQGSTERATIFTAQEMKKATNNYDEDRVIGKGGHGTVYKGVLSDNRVVAIKKTKISSQTEIEQFINEVLVLSQTNHRNIVKLLGCCLEIEVPLLVYEFITNGTLSEHIHVEGQASQLSWQVRLRVAAETAEALAYLHSAASTPIIHRDVKTENILLDDNLTAKVSDFGASKLIPINKTQLTTLVQGTLGYLDPEYFQSSQLTEKSDVYSFGVVLAELLTSMKALSFMRPESDRNLSNYFVSLLSEGRLPQILDNNIVNDANFEQIMEVAYLVKRCLMLKGEERPTMKEVAMELERIRTVEKLSSTATNLSLEETEYSFRVPRSPYTTDGRRGSGGSSIITGVDSIQTQVLEPLDEGR. 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03543 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Seca5g03543 527 FunFam Wall-associated receptor kinase 2 10 62 - -
Seca5g03543 527 ProSiteProfiles Protein kinase domain profile. 193 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03543 527 CDD EGF_CA 60 91 - -
Seca5g03543 527 CDD STKc_IRAK 199 466 - -
Seca5g03543 527 Gene3D Laminin 9 98 - -
Seca5g03543 527 Gene3D Transferase(Phosphotransferase) domain 1 269 486 - -
Seca5g03543 527 Gene3D Phosphorylase Kinase; domain 1 158 268 - -
Seca5g03543 527 SUPERFAMILY EGF/Laminin 58 102 - -
Seca5g03543 527 FunFam Wall-associated receptor kinase 2 163 268 - -
Seca5g03543 527 SMART egf_5 11 59 IPR000742 -
Seca5g03543 527 SMART egf_5 63 102 IPR000742 -
Seca5g03543 527 FunFam Wall-associated receptor kinase 2 269 486 - -
Seca5g03543 527 ProSitePatterns Protein kinases ATP-binding region signature. 199 222 IPR017441 GO:0005524
Seca5g03543 527 SMART serkin_6 193 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03543 527 SUPERFAMILY Protein kinase-like (PK-like) 177 470 IPR011009 -
Seca5g03543 527 SMART egfca_6 16 59 IPR001881 GO:0005509
Seca5g03543 527 SMART egfca_6 60 102 IPR001881 GO:0005509
Seca5g03543 527 Pfam Protein kinase domain 193 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03543 527 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 471 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03543 Seca-Chr5 92344597 92349440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03543 1 467 Receptor kinase-like Gene Family AT1G21230 52.452 1.64e-169 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca5g03543 Pkinase 7.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03543 - - vun:114190859 617.461