Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03536 ATGGCTAACTCAAACTTGCTTTCACCCTTTGCAAAAACAGGGGTGAATCAGGGGAATGAAATTGAAGGTTACAGTGAAGAATTTCAGGCAATGCTAGATAGATTGGACCAAGAAGATAGCCTTGAAGATGCTAGTTTAGTTTTGGAGAAGAAAAGAAGACTCAGTTTTGATCAAGTCAAAGCCTTAGAGAGAAGCTTTGAGTTGGACAACAAGCTAGAGCCAGAGCGCAAGGTGAAGCTAGCAGAAGAACTAGGCTTGCAACCAAGACAGGTTGCAATTTGGTTCCAAAATCGCCGTGCCCGTTGGAAAACAAAACAATTGGAGAAGGACTATGGTATTCTAAAGTCCAATTTTGATGTTCTCAAGGTTGAGTATAATAATCTTGAGCAAGAGAATGAGGCTCTTACTATAAAGCTAAGAGAGTTGAAAGCAAAATTGTGTAAAGTTGAAAGCAATGAGTCAGAGAAAGAAGAATCTCCCATTTCAGAAGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAAGTTCAGTGATACACTGGCTTCACCACTCTGATTCAAGAGGGTCTCCTGATAGAATTTTTCAGAACCACTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTATCAATGAGTTCTGCAATTTCTTTTCAGTTGATCAATCCCCAACCTTGTAA 744 0.3938 MANSNLLSPFAKTGVNQGNEIEGYSEEFQAMLDRLDQEDSLEDASLVLEKKRRLSFDQVKALERSFELDNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKQLEKDYGILKSNFDVLKVEYNNLEQENEALTIKLRELKAKLCKVESNESEKEESPISEVRDRGASESNSNGVVKEESNVDSPLCFNGSLPSSSSVIHWLHHSDSRGSPDRIFQNHFMRMEEQNFFSINEFCNFFSVDQSPTL. 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03536 247 FunFam Homeobox-leucine zipper protein HOX13 53 102 - -
Seca5g03536 247 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Seca5g03536 247 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 182 IPR045224 GO:0003700
Seca5g03536 247 MobiDBLite consensus disorder prediction 155 179 - -
Seca5g03536 247 Coils Coil 111 145 - -
Seca5g03536 247 Pfam Homeodomain 50 103 IPR001356 GO:0003677
Seca5g03536 247 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Seca5g03536 247 Pfam Homeobox associated leucine zipper 105 146 IPR003106 GO:0006355|GO:0043565
Seca5g03536 247 CDD homeodomain 50 106 IPR001356 GO:0003677
Seca5g03536 247 Gene3D - 49 112 - -
Seca5g03536 247 SUPERFAMILY Homeodomain-like 49 107 IPR009057 -
Seca5g03536 247 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Seca5g03536 247 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Seca5g03536 247 SMART HOX_1 48 109 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03536 Seca-Chr5 92282648 92284400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03536 27 146 Homeobox Transcription Factor Family AT5G65310 63.780 8.19e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca5g03536 Homeodomain 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03536 K09338 - qsu:111985016 261.151