Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03529 ATGGAAAACCCCAGATGCGGGTTTCTCCTTGCTCTGCCATCGTTCCTCTTGTTACTGGCTTCATTCCCTTTCAGTGCAGAATCCAAGTGCACACAGGGTTGTCCACTAGCTCTAGCCTCCTACTACATATGGAAAGGTTCCAACCTCACATATATTTCAGAAATCATGCCATCTTCGCTTCTCACAAAGCCTGAAGACATAGTCAACTACAACAAAGCCACTATACCTAACAAAGACAGTGTTCAATCAGACCAAAGGGCCAACATTCCATTCCCATGTGACTGCATCAATGGCGAGTTCCTCGCTCACACGTTTAGTTACGATGTTCAGACAGGGGACACGTATGAAAAAGTTGCTGGGTACTACGCTAACCTCACCAATGTTCAATGGTTGATGAGGTTCAATAGCTACGGTCCCAATAGCATTCCAGACACTGGATCCCTTAATGTTACCGTTAACTGTTCTTGTGGGAACAGTGATGTTGATGATTATGGATTGTTCATCACTTACCCTCTTAGGCCTGGGGAGACTTTGGGGACTGTGGCAAATGAAATGAACCTTGATTCAGCCTTGCTGCAGAGGTACAATCCCGGTGTCAATTTCAACCAAGGGAGTGGCCTGGTTTTTATTCCGGGCAAAGATCAAAATGGTAGCTATGTGCTTTTGGTGTCCAGTTCAGGAGGTCTTGCTGGTGGAGCTATTGCTGGAATAGCTATTGGAGTAGTGGCTTGTCTTCTGTTATTGGCAGTTTGTATCTATTTTGGATATTTCCGGAAGAAGAAGATACAGAAGGAGGAATTCCTTGCACAAGATTCCAATGCTTTTTTAGCTCAAGATGGGAAGGATGAAACTTCTCGTAGTGCTGCAAATGAAACGCCGAGGCCTGGTGGTCCTGCTGTCATCACAGGCATAACAGTGGACAAATCGGTGGAATTCTCATATGAAGAGCTAGCAACTGCCACAGATAACTTTAGTATGGCTAATAAAATTGGTCAAGGTGGTTTTGGCTCTGTCTACTATGCGGAGTTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCTGAATTGAAAGTCCTGACACGTGTTCATCATCTTAACTTGGTGCGGTTGATTGGATATAGTATCGAGGGCTCTCTTTTCCTTGTCTATGAATACATTGAGAATGGAAACTTAAGCCAACATTTGCGTGGTTCAGGTAGAGATCCACTGTCATGGGCTGCAAGGGTGCAGATTGCTTTGGATTCCGCCAGAGGTCTTGAATATATTCATGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGTCAGCAAACATATTAATAGACAAAAACTTCCGGGGGAAGGTTGCTGATTTTGGATTGACCAAACTGACAGAAGTTGGAAGCTCATCGCTTCCCACTGGTCGTCTTGTCGGAACATTTGGATACATGCCACCAGAGTATGCTCAATATGGAGATGTTTCTCCCAAAGTAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCAGCTAAGGAAGCAATCGTCAAGACAAGCGAATCTATTGCTGACTCAAAGGGCCTCGTAGCTTTGTTTGAAGAAGTTCTTAGTCAGCCTGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGATAACTACCCTATTGATTCAGTTCGCAAGATGGCTCAACTAGCCAAAGCATGTACACAGGACAATCCCCAACTGCGTCCAAGTATGAGATCCATTGTTGTTGCTCTTATGACACTTTCTTCAACTACAGATGATTGGGATGTTGGCTCCTTCTATGAAAATCAAAATCTTGTGAATCTTATGTCAGGAAGATAG 1872 0.4359 MENPRCGFLLALPSFLLLLASFPFSAESKCTQGCPLALASYYIWKGSNLTYISEIMPSSLLTKPEDIVNYNKATIPNKDSVQSDQRANIPFPCDCINGEFLAHTFSYDVQTGDTYEKVAGYYANLTNVQWLMRFNSYGPNSIPDTGSLNVTVNCSCGNSDVDDYGLFITYPLRPGETLGTVANEMNLDSALLQRYNPGVNFNQGSGLVFIPGKDQNGSYVLLVSSSGGLAGGAIAGIAIGVVACLLLLAVCIYFGYFRKKKIQKEEFLAQDSNAFLAQDGKDETSRSAANETPRPGGPAVITGITVDKSVEFSYEELATATDNFSMANKIGQGGFGSVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGRDPLSWAARVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKTSESIADSKGLVALFEEVLSQPDPTEDLCKLVDPRLGDNYPIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR. 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03529 623 SMART serkin_6 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03529 623 CDD STKc_IRAK 330 592 - -
Seca5g03529 623 Pfam Protein tyrosine and serine/threonine kinase 326 594 IPR001245 GO:0004672|GO:0006468
Seca5g03529 623 Gene3D Transferase(Phosphotransferase) domain 1 395 614 - -
Seca5g03529 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Seca5g03529 623 FunFam LysM receptor kinase 2 303 394 - -
Seca5g03529 623 ProSiteProfiles Protein kinase domain profile. 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03529 623 SUPERFAMILY Protein kinase-like (PK-like) 305 595 IPR011009 -
Seca5g03529 623 FunFam PTI1-like tyrosine-protein kinase 3 395 609 - -
Seca5g03529 623 Gene3D Phosphorylase Kinase; domain 1 301 394 - -
Seca5g03529 623 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Seca5g03529 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 609 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03529 Seca-Chr5 92210314 92217831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03529 10 623 Receptor kinase-like Gene Family AT3G21630 58.880 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca5g03529 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03529 - K13429 gmx:100777781 998.423