Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03526 ATGTCTTCCTCATTCTGTTTGAAGCTTTTCTCAATCCTTTTGTTCTGCATACATATCTTCCCTATATTTTCACATACTGAAACAACATCAGTTTTCAGCCACTACAACTGCACAAGCACACATACATTTAGTCCCAACAGCACTTACCAATCCAACCTAAACACACTCTTATCTACACTTTCATCCAAAGCTTCTAGCAGCACTAACCAAGTCTTCTACAACACCACAATTGGTGGAACAAACACTTGGGACACTATCTATGGCCTCTTCATGTGCATTGGATACATAGAGAACTGTGAAGAATGTGTGAAGAACTCCATTCAGACACTTACCTCAATGTGTGCCTTCAATAAAGAAGCTATAATTTGGTCAGATGAATGCTTGGTGCATTATTCCAACCAATCTTTCTTCAACACTATGGAGGAATGGCCATTATATTGTGTGCAAAACACAGAGGATTATCATGGCCTATTGGATAGCTTCAACAAAGTGATAAGTTCCTTGATGGAGGATCTTCTAACTCAAGCTAGTGAAGCTCCAATTGGTTCTAATAAATTTTCTGTCAAGAAAGCAATTTTCTCTGAGGACAATTTTTTGTTTGGCCTTGCTCAATGCACCCCAAATCTCTCAAAGGACAATTGCACAGAGTGTCTCAAGGATGCCATGGCTTATCTACAAAACTCATGTGCTAGAGGAAAGACAAGAGGAAGAGTTCTATATCCAAGTTGTATTGTTAGATATGATCCTTATCCATTTTCTCCATTACATAGAGGAGAGAAAAAGAATCATGGAGCACTAGCATCTTTCTTGATTCTCCATGCACTTATTCCAGTTATTGTTTTCTCTTTTGGGTGTTATCTGCTACATAGGATAGCAAGGAGGAATCACAAGCACCAGAAAGAAAATTTTGGGGAAGAGATTACAACAGAAATGAACTCTTTACAATTTGATTTGAGTACTATTCAATTAGCAACAAACAAGTTCTCTGTTGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTTTACAAGGGTGTGTTTCCTAATGGACATGAAATAGCTGTAAAGAGGCTCACAAGAAATTCAAGTCAAGGAGCTGTAGAATTCAAGAATGAAGTTTTGTTGATAGCCAAGCTTCAACACAGAAATCTTGTGAGATTGTTAGGATTTTGCATGGAAAGGAATGAGAAGATACTCATTTATGAATTTATGCACAACAAAAGCCTTGATTACTACCTATTCAGTATGGTACTCTTAACCTTTTATCCTTATTCACTTAATGCTTTTTTATTTTATACAACTTGTGACAATTTAAACATCACAGGCCCTGTAAACCATAGAAAATTAACTTGGCATGAACGTTACAAGATCATAATAGGGATTTCCCGAGGTATTCTTTATCTCCATGAGGATTCTCATCTCAAAATCATACATTGTGATCTTAAACCCAGCAACATTTTGTTAGATGACAAAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATTGTTTCCATGGATCAAATGCAAGGAAATACTAGTATAATTGCTGGGACATATGGCTACATGTCTCCTGAATATGCAATGCTAGGCCAATTTTCTGTGAAATCTGATGTATTCAGCTTTGGAGTCATAATTCTTGAGATTGTTAGTGGAAAAAGAAATGTTGATTTTAATGGGGAAGATTCAATTGATGACCTCTTGAGCCATGCATGGAAGAAGTGGAGGAATAATAAGGAATTAGAATTGTTGGATCCTACATTAGCACACTCATTTTCAGAAAAAGAAATTAAGAGATGCATACAAATTGGTCTACTATGTGTGCAGGAAAACCCAGATCAAAGGCCTACTATGGCAACAATTGCTTTGTATTTTAACTGTGATTCAATGGTTCTGCCATTACCTAAAGAGCCAGCATTTTTCATGCGTGGAAGAACAGAATCAAGGATGGCTAAAAAGGAATCAGAGTTAGGTCGACCTAAAAGTCATTAA 1995 0.3684 MSSSFCLKLFSILLFCIHIFPIFSHTETTSVFSHYNCTSTHTFSPNSTYQSNLNTLLSTLSSKASSSTNQVFYNTTIGGTNTWDTIYGLFMCIGYIENCEECVKNSIQTLTSMCAFNKEAIIWSDECLVHYSNQSFFNTMEEWPLYCVQNTEDYHGLLDSFNKVISSLMEDLLTQASEAPIGSNKFSVKKAIFSEDNFLFGLAQCTPNLSKDNCTECLKDAMAYLQNSCARGKTRGRVLYPSCIVRYDPYPFSPLHRGEKKNHGALASFLILHALIPVIVFSFGCYLLHRIARRNHKHQKENFGEEITTEMNSLQFDLSTIQLATNKFSVDNKIGEGGFGAVYKGVFPNGHEIAVKRLTRNSSQGAVEFKNEVLLIAKLQHRNLVRLLGFCMERNEKILIYEFMHNKSLDYYLFSMVLLTFYPYSLNAFLFYTTCDNLNITGPVNHRKLTWHERYKIIIGISRGILYLHEDSHLKIIHCDLKPSNILLDDKMNAKISDFGLARIVSMDQMQGNTSIIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIVSGKRNVDFNGEDSIDDLLSHAWKKWRNNKELELLDPTLAHSFSEKEIKRCIQIGLLCVQENPDQRPTMATIALYFNCDSMVLPLPKEPAFFMRGRTESRMAKKESELGRPKSH. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03526 664 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Seca5g03526 664 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Seca5g03526 664 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 289 403 - -
Seca5g03526 664 Gene3D Transferase(Phosphotransferase) domain 1 437 630 - -
Seca5g03526 664 CDD STKc_IRAK 334 623 - -
Seca5g03526 664 ProSiteProfiles Protein kinase domain profile. 328 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03526 664 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Seca5g03526 664 Gene3D - 29 136 IPR038408 -
Seca5g03526 664 Gene3D - 145 252 IPR038408 -
Seca5g03526 664 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 651 - -
Seca5g03526 664 Pfam Protein tyrosine and serine/threonine kinase 330 623 IPR001245 GO:0004672|GO:0006468
Seca5g03526 664 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
Seca5g03526 664 SMART serkin_6 328 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca5g03526 664 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Seca5g03526 664 Gene3D Phosphorylase Kinase; domain 1 289 403 - -
Seca5g03526 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Seca5g03526 664 FunFam cysteine-rich receptor-like protein kinase 10 424 633 - -
Seca5g03526 664 SUPERFAMILY Protein kinase-like (PK-like) 313 644 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03526 Seca-Chr5 92185534 92188880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03526 4 650 Receptor kinase-like Gene Family AT4G05200 42.012 2.32e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca5g03526 PK_Tyr_Ser-Thr 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03526 - - mtr:11443024 862.448