Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03520 ATGGCTAACCGGCAAATAATCAATTCTCCTTCTTTTGCGTTGCCATCAGTGCAACACTCTTCTTCTTCTTCTCTGAAAAGATATGATGTTTTTCTCAGCTTTCGAGATCCATCACATATAAGGAAGCAGACAGGGAGCTACGAGGAAGCGTTTGCAAAACATGAGGGAGATCTAAACATCTCAAAAGAAAGGTTACAAAAATGGAGATCTGCTCTCACAGAAGCAGCCAATTTGGCTGGTTGGGACTCTGAAACAAATAATAGGACCGAATCTGAATTCATTAAGGAGATTGTTAAAGACATTTTGCAAAAGCTAAATCTTAGGTACCCAATTGAATTGAAGAGACTAGTTGGAATCGAGGAAAATTATGCAGAGGTTGAATCATTGTTGGAAATTAGCTCAAGGCAAGTTCGAATGATTGGAATATGGGGCATGGGTGGCATAGGTAAAACTACCTTGGCAATTGCTTTACATGCCAGATTGTCTTCTCAATTTGAAGCTCATTGCTTTCTCAAAAATGTAAGGGAACAATATTCAGAAAAAAATGGTCAAATTAACTTACGGGATAAACTATTTTCTAAGCTGTTAGAGGAAGAAAAGCTTCATTTTGATATACCTGAACTAGAATCTTCTTTTGTGAGGAGCAGGCTGAGACGTAAAAAAGTTTTTATTGTTTTGGATGATGTGGCAACCTTGGAACAGTTAGAAGATCTAATTGGTGATTACAAATGTTTGGGACCAGGAAGTAGAGTGATAGTGACAACTAGAAATAAGCACATACTTTGCCATGTTGATGGAACATATAAGGTTAAGGAATTGAATGACAATGACTCTCTTCAGCTTTTCTGTTTGAATGCCTTCAGTGAAAAGCATCCTAAAAGTGGATTTGAAGAGCTATCAGAAAGTGTAATTGCCTATTGCAAAGGCAATCCTTTGGCTTTAAAAGTTTTGGGTGCACACCTTTATTCAAGAAGTGAAGAATCATGGAAAAGTGAATTGAGAAAGCTTCAGAAGATTCAAGATGACAAAATTCACACTGTGTTAAAATTGAGTTTTGATGACTTAGATTGTACTGAACAGGACATATTTCTAGACATTGCATGCTTCTTAAAAGGAGAATCCAAAGATGAAGTAACAAGTCTACTAGAAGCTTGTGGTTTCTTTCCAACCATTGGAATAGAAGTCCTTATAGATAAGTCTCTTATAAATATATCAAATGATGGCAAAATAGAAATGCATGATTTGATACAAGAAATGGGTCGGAATATTGTTCATCAAGAATCTAGGAAAGAACCCGGAAGACGAAGTCGATTATGGGATCCTAAGGAAGTGTATGATGTACTGAAAGATAATAAGGGAACTGAAGCTATAGAAGGCATAATTTTAGATGTTTCTAAAATTGAGAATCTTCATTTGACTGTTAATTCCTTTGCAAAAATGACTAACATAAGATTTCTGAAATTCTACTCTCAAAAGTGGAGTGACAAATGCCATATATACCTTCCTAACGGTCTTAAATCACTGTCAAACAAATTGAGGTACCTTCAATGGAATGGATACTATTTGGAGTCTTTGCCATCAACCTTTTGTCCTAAATTGCTTGTAAAACTTTCCATGCCTCACAGCAACCTTGGAAAACTTTGGGACGGAGTTCAGGATCTTGTGAATTTAAAGGAAATTAATCTTGATTTCTCCAAACACCTGGTTGAGCTTCCAGACTTATCTATGGCCACAAATCTTGATGCATTATCTCTTCGTCGATGTGAAAGTTTGCGTCAAGTTCATCCATCCATTTTGTCTCTCCATAAGCTTCAGTTTCTAGATTTAGAAGGTTGCACAGAGATTGAAAGCCTTCAAACTGATGTTCATTTGGAATCTCTTCGTTACCTCTCTCTCAAGAAATGCTCATCTATAAAGGAATTTTCAGTCTCATCAAAAGAGCTTTTTGCATTGTGGTTGGAGGGTACAGCTATAAAAAAATTACCTTCATCAATTTGGCAGAGTGAAAATCTTAACCAAATTCATTTGCGAGGATGTGACAATCTTGACAATTTGGGGAATAAGTTAACTCATGATCCAGGAGTAGGATCTCTCTCATGTCTAATTCTTTCTGAATGCAAACAACTGAATGCATCGAATCTATGTTTCATCCTTGATGGTTTGCAGTCTTTAACCAAGTTGTACCTGGACCATTGTTACAACTTACGATCACTCCCTGATAGCATTGGCTTGTTATCATCACTAGAGTACTTAAACCTATCAGGAAGTAATGTTGAGATCTTGTCTCCAAACATCAAAAACCTTTTGATGCTAAAAGAGCTTCGGTTAGACAATTGCAATAAACTTATGTCTCTGCCAAAGCTTCCACCATCCTTGAAAATGTTAGCTGCCTATAAATGCACACAACTAATTAATGCATCGAATATATGCCTTGATGGTCTGTGGTCATTAACATGGTTGGAGCTAGAAAATTGTTACAACTTACAAGAACTCCCTGACAACATTGGCTTGTTATCATCATTACAAATCTTAGACCTAAGAGGAACCAAGGTTGAGATCTTGTCTCCAAACATCAAGAACCTTTTGATGTTGGAAATGCTTAAGTTAGACAATTGCAAGAAACTTGTGTCTCTTCCTGAGCTTCCATCATCCTTGAGAATTTTAAGACTCTCTAATTGCACACAATTGAATGCATCAAATATATGCTTTGATGGCCTACAGTCTTTAACGTCACTGAATTTGAATAATTGTTGCAACTTAGGAGCACTTCCTGACAACATTGGCTTGCTGTCATCATTAGAGTACTTGAACCTATCAGGAAGCAATGTTGAGATCTTGCCTCCAAACATCAAGAACCTTTTGATGCTGAAAGAGCTTTGGTTAGATAATTGCATGAAGCTTGTGTCTTTACCAAAGCTTCCTCACTCCTTGCAAGTGTTAAGTGCCCTTAATTGCACATCTTTAGAGATAGACTTCAGTCAATTGCCAGTGATAGAACACAACATATCATTTTCACTTAAACATGGAATTAAAGAATGTTGTCAATATGTTTTTCTCCCCGGATCCCAAGTTCCAAATAGTTTTAGCTTTTGTGCTAAAGAGGCTTCAATAACTATTCCACATCTTCCACAATCTGACTTATGTGGTTTTATATTTTGCCTCATTCTTTCTCAGTCACTGCCAAATGGCAAATATAAATCTGTTGAATGTTCTATCAGCATATATTCCAAAAGCATTGGTAACAAAAAGATCATTTTGGATTATCAAAATCTGATTTCAGATCACATGCTTTTTTGGAAAGGGATGATAAAGGGGTGTGGGGTTCACCCTGTATATGCCACTGAACATGGTTGTTCCTCTAAACAACATGATTTGAAGTTGGAGTTTAAGGGTAGTTCTAAAGATTTTGTTGAGATAGAATCCAGCAGTTCTAAAGACATCAATAAGTTACAACCCAGAGCATTTGGATTTGTAATTGAAGGATCTAATGAGACTAAGAATTCGCAGGAAGTCACACACCAAATAATTACAACAGGAATGCAGAATGAAAATTCTCTGTATCACAACTTCATAGCTTCAAAAAGCTCAAAAGTTCAAGAAGGAGGAGAAAAAGAAGACTTGGAAAGTGAAGCTGAACAAAACAAATCAAAGAAAAGAAAATTGAAGACTTTAAAAACTAACCTAGCACTACCCACTTCTTCAAAAACTCTGAAGAAGAGAAATAAGAAAATAAAAACTAAGGAATCTCAACCCAGCCATTCTGAGGAAAATGAAGAAGCTGTTAACACCATTGATCAGGGAGAATCTACACCACTGATAGAACCCCCATTGACAAATTCTGCTTATCCTGTTCCAAGTCATGATCAAATTAAACAAGAAAAACTAAAGGAACAAGCCACAAGCAGTGGATCTGGATCCTCTCTTTTTCATCAACTTAATATTTCAAATAAATCTCTTCCTAAATATAGCCCAATGGATCTTGACGAGTGCCTTCAAACTTTGGATGAAAATCCATTTGCTATTCTCAATATGCTCTCTGGGGATCTTTCCTTCAATTCGGCTCAATCAGAATCAATCATTCTAAAGGAACAATCAGAAGAACCCATCCAAAAGCTTCTTGAAAACTTCAGAGAACTAGTCTTCACAAATCCTTTGATGGAACTTCTTCCAAAAGACCTTAAATTTCAAGAAATCATATCAGCATACATTAAAACTTTTGGTACTCGACATGGAGAACTTTCTGTTGAACAAGTTCGAGGGCTTGATCATTTCATCCAATTTTACAACCAAGTCATTGATATCTTGAAGCAATGTCAAAACACTGATGGAGAATTAACTCAGGCCAATTTAGAGACAACTGATTTGTGTGACAAGTTAAAAGATTTGAAGACCAAGGTAGTGAAGTTTGATGAAATGGTTAAGTCCAACTATCAGAGAATTTGTGAAATTGAAAAGAGGAAGAAGGAAATTGAAGACCAAATCAGGAAACTGAGGAAGGAGGAAGAGGATTTACAAGTAGAAAAATCTTTTCTCGAATCAACTAATTTGAAGAAGGAAAAAAAGAAGGAAGAAATGATCAATTTTGCCAAATCTATTTCAATAGATGCAGTGAAGGCCACAAAAAGGATAGTGGATCTTGAGAAAGCAAAGCACCATTTGAATGACATATATGCAAATTTTGAGAAATGTTTTGATCAAATGAGATCGAATCCTCCCTTTTAG 4722 0.3617 MANRQIINSPSFALPSVQHSSSSSLKRYDVFLSFRDPSHIRKQTGSYEEAFAKHEGDLNISKERLQKWRSALTEAANLAGWDSETNNRTESEFIKEIVKDILQKLNLRYPIELKRLVGIEENYAEVESLLEISSRQVRMIGIWGMGGIGKTTLAIALHARLSSQFEAHCFLKNVREQYSEKNGQINLRDKLFSKLLEEEKLHFDIPELESSFVRSRLRRKKVFIVLDDVATLEQLEDLIGDYKCLGPGSRVIVTTRNKHILCHVDGTYKVKELNDNDSLQLFCLNAFSEKHPKSGFEELSESVIAYCKGNPLALKVLGAHLYSRSEESWKSELRKLQKIQDDKIHTVLKLSFDDLDCTEQDIFLDIACFLKGESKDEVTSLLEACGFFPTIGIEVLIDKSLINISNDGKIEMHDLIQEMGRNIVHQESRKEPGRRSRLWDPKEVYDVLKDNKGTEAIEGIILDVSKIENLHLTVNSFAKMTNIRFLKFYSQKWSDKCHIYLPNGLKSLSNKLRYLQWNGYYLESLPSTFCPKLLVKLSMPHSNLGKLWDGVQDLVNLKEINLDFSKHLVELPDLSMATNLDALSLRRCESLRQVHPSILSLHKLQFLDLEGCTEIESLQTDVHLESLRYLSLKKCSSIKEFSVSSKELFALWLEGTAIKKLPSSIWQSENLNQIHLRGCDNLDNLGNKLTHDPGVGSLSCLILSECKQLNASNLCFILDGLQSLTKLYLDHCYNLRSLPDSIGLLSSLEYLNLSGSNVEILSPNIKNLLMLKELRLDNCNKLMSLPKLPPSLKMLAAYKCTQLINASNICLDGLWSLTWLELENCYNLQELPDNIGLLSSLQILDLRGTKVEILSPNIKNLLMLEMLKLDNCKKLVSLPELPSSLRILRLSNCTQLNASNICFDGLQSLTSLNLNNCCNLGALPDNIGLLSSLEYLNLSGSNVEILPPNIKNLLMLKELWLDNCMKLVSLPKLPHSLQVLSALNCTSLEIDFSQLPVIEHNISFSLKHGIKECCQYVFLPGSQVPNSFSFCAKEASITIPHLPQSDLCGFIFCLILSQSLPNGKYKSVECSISIYSKSIGNKKIILDYQNLISDHMLFWKGMIKGCGVHPVYATEHGCSSKQHDLKLEFKGSSKDFVEIESSSSKDINKLQPRAFGFVIEGSNETKNSQEVTHQIITTGMQNENSLYHNFIASKSSKVQEGGEKEDLESEAEQNKSKKRKLKTLKTNLALPTSSKTLKKRNKKIKTKESQPSHSEENEEAVNTIDQGESTPLIEPPLTNSAYPVPSHDQIKQEKLKEQATSSGSGSSLFHQLNISNKSLPKYSPMDLDECLQTLDENPFAILNMLSGDLSFNSAQSESIILKEQSEEPIQKLLENFRELVFTNPLMELLPKDLKFQEIISAYIKTFGTRHGELSVEQVRGLDHFIQFYNQVIDILKQCQNTDGELTQANLETTDLCDKLKDLKTKVVKFDEMVKSNYQRICEIEKRKKEIEDQIRKLRKEEEDLQVEKSFLESTNLKKEKKKEEMINFAKSISIDAVKATKRIVDLEKAKHHLNDIYANFEKCFDQMRSNPPF. 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03520 1573 Coils Coil 1204 1227 - -
Seca5g03520 1573 SMART LRR_typ_2 745 767 IPR003591 -
Seca5g03520 1573 SMART LRR_typ_2 721 744 IPR003591 -
Seca5g03520 1573 SMART LRR_typ_2 838 860 IPR003591 -
Seca5g03520 1573 SMART LRR_typ_2 930 952 IPR003591 -
Seca5g03520 1573 Gene3D Ribonuclease Inhibitor 425 647 IPR032675 -
Seca5g03520 1573 Gene3D Ribonuclease Inhibitor 885 1008 IPR032675 -
Seca5g03520 1573 MobiDBLite consensus disorder prediction 1263 1286 - -
Seca5g03520 1573 Coils Coil 1480 1514 - -
Seca5g03520 1573 Pfam TIR domain 36 111 IPR000157 GO:0007165
Seca5g03520 1573 Gene3D - 28 102 IPR035897 -
Seca5g03520 1573 FunFam Disease resistance protein (TIR-NBS-LRR class) 274 356 - -
Seca5g03520 1573 SUPERFAMILY L domain-like 697 986 - -
Seca5g03520 1573 Gene3D - 273 356 IPR042197 -
Seca5g03520 1573 Pfam NB-ARC domain 127 342 IPR002182 GO:0043531
Seca5g03520 1573 SUPERFAMILY L domain-like 412 795 - -
Seca5g03520 1573 MobiDBLite consensus disorder prediction 1197 1307 - -
Seca5g03520 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 366 IPR027417 -
Seca5g03520 1573 PRINTS Disease resistance protein signature 139 154 - -
Seca5g03520 1573 PRINTS Disease resistance protein signature 599 615 - -
Seca5g03520 1573 PRINTS Disease resistance protein signature 216 230 - -
Seca5g03520 1573 PRINTS Disease resistance protein signature 307 321 - -
Seca5g03520 1573 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 30 642 IPR044974 GO:0006952
Seca5g03520 1573 Gene3D Ribonuclease Inhibitor 648 883 IPR032675 -
Seca5g03520 1573 Gene3D - 103 272 IPR027417 -
Seca5g03520 1573 Pfam Leucine Rich Repeat 534 552 IPR011713 -
Seca5g03520 1573 FunFam Disease resistance protein RPS4 454 646 - -
Seca5g03520 1573 MobiDBLite consensus disorder prediction 1198 1217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03520 Seca-Chr5 92106531 92114338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03520 856 989 WRKY Transcription Factor Family AT4G12020 33.571 8.17e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03520 - - gmx:100809963 1019.22