Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03519 ATGCATTCCTTACCATTTTTACCATATTTTTATGCTAGGACTGAATCTGAATTCATTAAGGAGATTGTTAAAGACATTTTGCAAAAGCTAAATCTTAGGTACCCAATTGAATTGAAGAGACTAGTTGGAATCGAGGAAAATTATGTAGAGGTTGAATCATTGTTGGAAATTAGCTCAAGACAAGTTCGAATGATTGGAATATGGGGCATGGGTGGCATAGGTAAAACTACCTTGGCAATTGCTTTACATGCCAGATTGTCTTCTCAATTTGAAGCTCATTGCTTTCTCAAAAATGTAAGGGAACAATATTCAGAAAAAAATGGTCAAATTAATTTACGGGATAAACTATTTTCTAAGCTGTTAGAGGAAGAAAAACTTCATCTTGATATACCTGAACTAGAATCTTCTTTTGTGAGGAACAGGCTGAGATGTAAAAAAGTTTTTATTATTTTGGATGATGTGGCAACCTTGGAACAATTAGAAGATCTAATTGGTGATTACAAATGTTTGGACCAGGAAGTAGAGTGA 528 0.339 MHSLPFLPYFYARTESEFIKEIVKDILQKLNLRYPIELKRLVGIEENYVEVESLLEISSRQVRMIGIWGMGGIGKTTLAIALHARLSSQFEAHCFLKNVREQYSEKNGQINLRDKLFSKLLEEEKLHLDIPELESSFVRNRLRCKKVFIILDDVATLEQLEDLIGDYKCLDQEVE. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03519 175 Gene3D - 19 171 IPR027417 -
Seca5g03519 175 Pfam NB-ARC domain 52 163 IPR002182 GO:0043531
Seca5g03519 175 PRINTS Disease resistance protein signature 141 155 - -
Seca5g03519 175 PRINTS Disease resistance protein signature 64 79 - -
Seca5g03519 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 165 IPR027417 -
Seca5g03519 175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 165 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03519 Seca-Chr5 92102464 92102991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03519 13 165 WRKY Transcription Factor Family AT4G12020 36.601 2.44e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03519 - - psat:127083514 197.593