Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03518 ATGGCTATGGAGAAAAAGACCAGTGCTGTTGCTTCTTCCTCCGCCTCCTCTTCTTCTGTGACGTCTCCGAAAAAATATGACGTTTTTCTTAGCTTTCGCGGTGAGGATACCCGCAGAAAGTTCACAAGTCATCTTTATGATGCTTTGTGCCGAAAGAAAGTTAGAACCTATATGGACAATGTGCTTGGAAAGGGATATGAGATCTCTCCAGCACTCATCAGAGCCATCGAAGAGTCGCATGCATCTATAGTTATCTTCTCAGAAAACTATGCCTCCTCAACATGGTGTTTGGATGAACTCGTCAAGATTCAGGAATGCAGGCAAGTGCAGGGACAAATTGTGATACCTGTTTTCTACGAAATAGATCCATCAGATGTAAGGAAGCAGAGTGGGAGTTACAAGGAAGCCTTTGCAGCATATGAGGAACGAGGCAACATAGACAAGTTGAAGAAATGGAGAAAAGCTCTCACAGAGGCGGCCAGTTTAGCTGGGTTCGACTCTCGATCATATGGACTTGTAACACCTTCATTCCTTTCTTTTCTGCCCTTTTCATGTGCTAGTGATGACTGTGAACTCATTAAAAGCATTGTCAGAGTTGTTTTGCAAAAATTGAATTCTAGATACCCTCAACAATTGACAGGACCCGTTGGAACTGGAATAAGTTATGGGGAAATTGAATCATCACTGAAAATTGGATCAAGAGAAGTTAGAATCATTGGAATATGGGGCATGGGTGGTATAGGTAAGACCACCCTTGCTACTGCTCTATATACCAAATTGTCTTCTCAATTTGAAGGCCATTGCTTCCTTTCAAATGTAAGGGAAGAATCAAACAAATATGGTCTCCATGTTTTACGTAAAAATCTTTTCTCTAAGCTGTTAGAGGAAGAAAATCTTCATCTTGATGTAACCAATCCAAAGTCCCATTTTGTGGCATGTTTGCTTAAACGTAAAAAAGTTTTTATTGTGTTGGATGATGTGACTAGCTCAGAACAATTACATGATCTAATTAGTAATTACAATTGTTGTGATTACGATTGCTTGGGACCAGGAAGTAGAGTGATTGTAACGACTAGAGATAAGAGCATATTTAGGAAAGTTCATGGAATATATGAAGTCAAGGGATTGAGTGAACATGACTCTCTTCATCTTTTCTGTTTGAATGCCTTTGGAGAAAAGCATCCTAAAAATGGATATGAAGATCTATCACATAGTGCAATTGCCTATTGTAAAGGCAATCCTTTGGCTTTAAAAGTTTTGGGTGCAATTCTTGGTTCAAAAAGAACAATAAGGGCATGGGAACATGGATTGAGAAAGCTCAGAGAGATTCAAGATGTGAAAATTCATGATGTGTTGAGATTGAGTTATGATGACTTAGATCGTATTGAGAAAAACATATTTCTGGACATTGCATGCTTCTCCAAAGGAAAGTCTATAGATCATGTAAAAAGCCTATTGGAAGCTTGCGATTTCTTTCCAGAAAGTGGAATAGAAGACCTTTGTAATAAAGCTCTCATAACTATTTCAGATGATAAAATAGGAATGCATGACCTGATTCAGGAAATGGGTCTGGAGATTGTTAATCGAGAATGTATCAATGACCCTGGAAGACGAAGTCGACTGTGGAAACCTAAGGACGTGTTTGATGTATTGAAAAATGACACGGGAACTAGAGCCGTTGAAGGCATAACTTTTGATATTTCTAAAGCTAGTGATCTGCATTTGAGCTCTTATTCCCTTGAAAGGATGACTTGCTTAAGATATCTTGAAGTCTATGGGATCTCTGACAAATGTAATATTTACTTTCCTGATGGCCTTGGGTCCTTGTCTGATAAATTAAGGTACCTTCATTGGCCTGGATTTTGTCTTGAGTCTTTGCCATCAACCTTTTGTGCAGAAAAGCTTGTAGAGATTCACATGCCTTCTAGCAAACTTAAAATGCTTTGGAATGGAGTTCAGAATCTGGTGAATTTGAAGAAAATTAACCTTGGCTTCTCCAAACACCTGATTGAGGTTCCAGACTTATCTAGGGCCACAAATCTTGAAACTGTAGATCTTCGTTCTTGTGAAAGCTTGAACCAACTCTGTCCATCAGTTTTATCTCTTCCTAAGCTTACACATCTGAATTTACAAAGATGCAGAGAGATTAAAAGCTTTAAATCCAATGTCCATTCAAAATCTGTGTGTGAACTCCAACTTGATGGTTGTTCATCTCTAGTTGAATTTTCAGTGACATCAGAGGAAATGAGGAAGTTGTCCTTACAAGGAACTGCTATATGCGAATTGCCGTCATCAATTTGGCTTAATAGGAAGCTTGCTTATCTTTACCTAAGTCACTGTAACAATCTTAACATTGTTGGAAATAGGTCATCAGATGATCCAGGAATAGAATATCTCAGAGAACTGGACCTTTCTGGGTGCACACAAATCAATGCATTGAATCTCCATCTCATCTTTGATGGCATACGATGTTTAAAACGGCTAGATTTGTCATGCTGCTACCACTTAAAAAAAATCCCTGACAGCATAACAGACCATCAAATACTGAGACAACTTGTGTTAGATGATTGCAGGGATCTTGTGTATCTACCAGAGCTTCCACCATACCTGCAACATTTGAGCGCCTTTAATTGCATTTCTCTAGAGAAAGACTTCACTCAATATCCCGTGCCTGAGCACGTGTTACAAAGCGTGCTTAACTGTCGTGAAAAACCTGAGGTTAGCAATGAGTTTGTTTTCTTCTTCCCAGGAGCCCGAGTTCCAGACGGGTTTCGTTTCATTACAGGAGAGGCTTCAATAACTCCTGCAAATATTCGAAAATCTGACTTGTGCGGTTTCATTTTTTGCATCATTCTTAAGGAGAGCTTAAATGTTGATACCCTTCACCTTGTTCAACTTATCTATGAAAATGAAAAAGAGGTCGGCTATGATGACAGTCAGTATATTGGTAAGGGGCTTTTGTTGGCAGACCATGTGTTATGTTGGTATGGTTCCATCGACAAACTTGTTAATATTCAAGAAAGTGAAGATGATGATCAATTTTACAACATATCATTTGAATTCAAACTTGATGACAAAGATGCACCATGGTCAATGGAGGGGATAAAGGGATGTGGGGTCTACCCAGTATATGCCTGGCAAGTGGGGTGGGAGCTTTCTGATAGATATAGAGAGGAGAAGATACATGGATCAAAATCCAATGCTCAAATCTCTGATACGCATTTGAAAATGGACATTGATGAGTTACAGCCCATAGTAATTGAATGCTCTAATAATGACAATGAAGATGACCAGGAACAAATTCTTACAACTTCTTCCAGCAAAGAAGGGGAGGACTTGAGTGAAAAACCTTCTTGTGACTGCTTCATCGGTCCCTTGCTGAAGCGCTTATGGACAATACTGGTGGGCAGTTGA 3414 0.3928 MAMEKKTSAVASSSASSSSVTSPKKYDVFLSFRGEDTRRKFTSHLYDALCRKKVRTYMDNVLGKGYEISPALIRAIEESHASIVIFSENYASSTWCLDELVKIQECRQVQGQIVIPVFYEIDPSDVRKQSGSYKEAFAAYEERGNIDKLKKWRKALTEAASLAGFDSRSYGLVTPSFLSFLPFSCASDDCELIKSIVRVVLQKLNSRYPQQLTGPVGTGISYGEIESSLKIGSREVRIIGIWGMGGIGKTTLATALYTKLSSQFEGHCFLSNVREESNKYGLHVLRKNLFSKLLEEENLHLDVTNPKSHFVACLLKRKKVFIVLDDVTSSEQLHDLISNYNCCDYDCLGPGSRVIVTTRDKSIFRKVHGIYEVKGLSEHDSLHLFCLNAFGEKHPKNGYEDLSHSAIAYCKGNPLALKVLGAILGSKRTIRAWEHGLRKLREIQDVKIHDVLRLSYDDLDRIEKNIFLDIACFSKGKSIDHVKSLLEACDFFPESGIEDLCNKALITISDDKIGMHDLIQEMGLEIVNRECINDPGRRSRLWKPKDVFDVLKNDTGTRAVEGITFDISKASDLHLSSYSLERMTCLRYLEVYGISDKCNIYFPDGLGSLSDKLRYLHWPGFCLESLPSTFCAEKLVEIHMPSSKLKMLWNGVQNLVNLKKINLGFSKHLIEVPDLSRATNLETVDLRSCESLNQLCPSVLSLPKLTHLNLQRCREIKSFKSNVHSKSVCELQLDGCSSLVEFSVTSEEMRKLSLQGTAICELPSSIWLNRKLAYLYLSHCNNLNIVGNRSSDDPGIEYLRELDLSGCTQINALNLHLIFDGIRCLKRLDLSCCYHLKKIPDSITDHQILRQLVLDDCRDLVYLPELPPYLQHLSAFNCISLEKDFTQYPVPEHVLQSVLNCREKPEVSNEFVFFFPGARVPDGFRFITGEASITPANIRKSDLCGFIFCIILKESLNVDTLHLVQLIYENEKEVGYDDSQYIGKGLLLADHVLCWYGSIDKLVNIQESEDDDQFYNISFEFKLDDKDAPWSMEGIKGCGVYPVYAWQVGWELSDRYREEKIHGSKSNAQISDTHLKMDIDELQPIVIECSNNDNEDDQEQILTTSSSKEGEDLSEKPSCDCFIGPLLKRLWTILVGS. 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03518 1137 PRINTS Disease resistance protein signature 676 692 - -
Seca5g03518 1137 PRINTS Disease resistance protein signature 238 253 - -
Seca5g03518 1137 PRINTS Disease resistance protein signature 314 328 - -
Seca5g03518 1137 PRINTS Disease resistance protein signature 410 424 - -
Seca5g03518 1137 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 172 - -
Seca5g03518 1137 SUPERFAMILY L domain-like 515 882 - -
Seca5g03518 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 470 IPR027417 -
Seca5g03518 1137 ProSiteProfiles TIR domain profile. 24 204 IPR000157 GO:0007165
Seca5g03518 1137 Gene3D Ribonuclease Inhibitor 727 887 IPR032675 -
Seca5g03518 1137 Gene3D - 208 372 IPR027417 -
Seca5g03518 1137 Gene3D Ribonuclease Inhibitor 563 726 IPR032675 -
Seca5g03518 1137 Pfam NB-ARC domain 232 459 IPR002182 GO:0043531
Seca5g03518 1137 MobiDBLite consensus disorder prediction 1 21 - -
Seca5g03518 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 784 IPR044974 GO:0006952
Seca5g03518 1137 MobiDBLite consensus disorder prediction 7 21 - -
Seca5g03518 1137 Pfam Leucine Rich Repeat 634 653 IPR011713 -
Seca5g03518 1137 Gene3D - 375 460 IPR042197 -
Seca5g03518 1137 Pfam TIR domain 25 210 IPR000157 GO:0007165
Seca5g03518 1137 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 165 IPR035897 -
Seca5g03518 1137 ProSiteProfiles Cro/C1-type HTH domain profile. 420 459 IPR001387 -
Seca5g03518 1137 Gene3D - 23 207 IPR035897 -
Seca5g03518 1137 SMART till_3 25 162 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03518 Seca-Chr5 92091437 92096080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03518 21 858 WRKY Transcription Factor Family AT4G12020 33.333 2.01e-105 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03518 - - cam:101499873 1090.87