Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03501 ATGGCTAACCAGCAAATGCAAATCATCAATCTTGCTTCTTCTTCTTCTTCGTCTTCTGCTGCGTCTCTTAAAACATATGATGTTTTTATTAGCTTTCGAGGTGAAGATACTCGTAAGAGCTTCACAAGCCATCTTCACGACGCTCTGAACCAAAAGAAAATTGAAACCTATATAGACTACAGGCTTGAAAAAGGAGAGGAGATCTCATCAGCACTCATCAAAGCAATTGAAGAGTCACTTGTATCTGTTGTTATTTTCTCGAAAGACTATTCGTCTTCCAAGTGGTGTTTGGATGAGATCAGTAAGATTATGGAATGTAAGAAGGATGAAGGACAGGTTGTGATACCTGTGTTCTATGAAATAGATCCATCACGTGTAAGGAAGCAAACAGGGACTTACGAGGAAGCGTTTGCAAAACATGAGGGAGATCTGAAGATCTCAAAAGAAAGAGTGCAAAAATGGAGATCTGCTCTCACAGAAGCAGCTAATTTGGCTGGTTGGGACTCTGAAACTTATAGGACTGAATCTGAATTCATTAAGGATATTATCAAAGACATTATGCAAAAACTAAATCTCAAATGCCCAATTGAATTGAAAGGATTGGTTGGAATTGAGGAAAATTATGAAGGGGTTCAATCCTTATTGGAAATTGACTCAAGTGAAGTTCGAATGATTGGAATATGGGGCATGGGTGGTATAGGTAAGACCACTTTGGCAATTGCTTTACATGCCAAACTGTATTCTAAATTTGAAGGTCATTGCTTTCTCACAAGTGTAAGGGAACAATCAGAAAAGTATGGTCTAAATGTCTTACGCAAAAAACTATTTTCTGAGCTATTAGAGGAAGAAAATCTTCATGTTGATGTACCCAAACTTGAATACCATTTTGTGACAAGAAGACTTAGACGTAAAAAGGTTTTTATTGTTTTGGATGATGTGGCTTCCTCAAAGCAGTTAGAAGATCTAATTGGTGATTATGATTGTTTGGGACCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAACACATATTTAGCCATGTTGATGGAATATATGAGGTCAAAGAATTGAATGACTATGACTCTCTTCAACTTTTTTATTTGAATGCATTCAGAGAAAATCATCTTATAAATGGATATGAAGAGTTATCAAAAAGTGTAATTGCCTATTGCAAAGGCAACCCTTTGGCTTTAAAAGTTTTGGGTGCACGTCTTCGTTCAAGAAGTAAAGAAATATGGAAAAGTGAATTGAGAAAGCTCCAAAAGATTCCAAATGTGGAAATTCATAATGTCTTAAAGTTGAGTTTTGATGACTTAGATCCATGTGAACGAGACATATTTCTAGACATTGCATGCTTCTTCAAAGGAGAATATAGAGATGATGTAACAAGTATACTAGAGGCTTATTTCTATGCTACCACTGGGATAGAAGTCCTCATAGATAAGTCTCTTATAACTATTTCAAAGAGGCTTACAATAGAAATGCATGACTTGATACAAGAAATGGGCTGGAATATTGTTCGTCAAGAATCAAGCAAAGAATGTGGAAGACAGAGTCGATTGTGGGATCCTAAGGATGTGTATGATGTATTGAAAGATAAAACGGGAACTAAAGCTATAGAAGGCATACTTTTGGATGTGGCCAAAATTGATGATCTATATTTGAGCTCTAATTCCTTTATAGAAATGAGTAACATAAGATTTCTTAAATTCTATTATGGGATGTGGAGTGGCAAATGTAAAATACACTTTCCTAATGGTCTTGATTCATTGCCTAACAAATTGAGTTACCTTCAATGGCACGGATATGGTTTGGGGTCTTTACCTTCAACCTTTTGTGCTAAATTGCTTGTAGAGCTTGTCATGCCCTATAGCAACCTTGAAAAGCTTTGGGACGGAGTTCAGAATCTTGTGAACTTAAAGGAAATTGACCTTCGATTCTCTGGAAACCTGATTGAGGTCCCAGACTTATCTATGGCCACAAATCTAGAAGGATTATCTCTTTCTCAGTGTAAAAGTTTGCGTCAAGTCCATCCATCCATTTTATCTCTCAACAAGCTTCAGGATCTGGATTTAGAAGGCTGCACAGAGATTGAAAGCCTTGAAACTAATGTTCATCTAAAATCTCTCCGTAACATCCGTCTCAGCAACTGCTCATCCCTAAAGGAATTTTCAGTCTCCTCAGAGGAACTACAGAGGTTGTGGTTAAATGGTACAAGTATTCAAAAACTGCCTTCATCAATATGGCGTTGTGAAAAACTTGGCTATATTGATTTAAATGGTTGTGACAATTTTGACAGTATTGAGATCAACAAGTTAACTCATGATCCTGGAATGAGATCTCTTAATACTCTAGACTTTTCTGGGTGTAAAGAACTCAATGCAAAGAATCTATGTTCTATCCTTGATGGTCAGCAATCTTTGAAATTGCTACGTCTAGAAAATTGTCATAACTTACAATCACTCCCTGATAATATTGGTTTGTTATCATCATTAGAGAGGTTAACACTAAGTGGAAGCAGTGTTGAGAGCTTACCTACAAACATTAAGAATCTTCTGAAGCTGAAAGAGCTTAAATTAGATAATTGCAAGAATCTTGTGTCCTTGCCAGAGCTTCCATCTTCCCTGCTAGTGTTAAGTGCTGTCAATTGCACATCTTTGGTGATAGACTTCACAAAATTGCAAATATCCTTTTCACTTAAACATGCACTTCGTGAACGTCCTGCATCTGTTTTTCTCCCTGGAGGCCAAGTTCCAGACAGGTTTAGTTTCCATGCTGAAGGGGCTTCAATAACTATTCCACATGTTCCAGAGTCTGGCTTATGTGGGTTTATTTATTGCCTCATTCTTTCTCAGTCACTGCCAAATAAGAGATATGGATATGTTGCCTGTTATATTTCTAATTATTCTGAAAAGATCAGTAGCAGAAGTACCTTTCTTGGTGATCAGAATTTAATTTCGGATCACTTGTTTCTTTGGTATTATGACATTAAAACAGGTGGAAATGGTTCTTTATATAAGACTATACAAAAGGGTGGAGTGTGGGATCCTTATAACTTATCATTTGAATTCCGTCTTGAAGATGAGGATGGAGAATGGTCAACTAAGGGGGGGATAAAAGGGTGTGGGGTCTACCCAATATATGCTACTAAACATGGCTATTCCTCTGAACAAAAAGGACTGGAGATGGATTTTGGGGGTAGTTTGGATATTGTTGAGTTAGAAACCAATAGTTTTAAAGATATTGATGAGGCACAACCTAAAGCAAATGGATTCAGGATTGAGGGATCTGATCATGACAATGAAGATGACCAAACTAAGAAATTGCAGGAAGTTATGCACCAGACAATTGAAATAGGTATGCAGGATGTAAAAGTGGACTCAAATGAAAAATCTTCATGTCACAATTTCATAGTTTCAACAGCTGGTGATTGTAAGAGAAAACCATCGAGTGTCAAGGAAGAAAATTACTACATAAGCTCAACGCCTAAAAATCAAATTATCTCCTTTGACACTCCAAGTGCTTCCAACATTGATACAAATCAGATTATTGAAGTGTCATCAGAAGAAAAAGACTTGACCAACAATGAAGTAGACAAATATTCTGAGTCAATCATGTTTGAGAAAGCTCATTCTGTTATGGAAATTGACAATCCACATCTTGAACCAAATTGGGATCCAATTGTCGAGCTTGAGAGCATGTTATATGAAAGTTATAACTCGTCTCTCATGTCCACTCACTCAACAACTATTTCACAGATAGAAGACCAAAGTCCAAAGGTGGCAGCTATCCTTGAAAAATTAGAGACCCTTTTGGAGTCCTCCCTTGAAGTTATCTCTTCAGATGATGAAGTCATGCAACAATTCCACCAAGTTTTGGAACAATTTGGCCAATTAGAAGACCGTGTCCCTATCAAGCTTCATCCTGTAATTTACAAGTTAAAGGCTTTCATTGAAGGTCTTGATGTAGGATTTATGGTGGCCCAAAAAACTATCCAAGATTATGATAAGCTGCTCCAATCAAGATCTCTTCTATCAAAGCAATTGGAAAGTGCCAAAGCCCAACAAGACCATATTAGTTCAAAAGTCTCTCGAGGTAAAACATGTCTTGAAAAGATCAATTCTGAGATTGTTGAACTAGAACAAAAATTGAATGTTTTGGTTGAGACTAGAGAGAAGCTAAAGAGAGATTTGGACTATTGTGATGTTGAAAGTAGCAAGCTAAAGATTCAGGTTGCACAATGGGTGCCAAAATGCAAGACTATTATCATAGCTTTAAAGAACTCTGAGGCTTCTTACAAAGTGGCCCTGACCTATAAGAAAAAAATGGAAGATGAGTGGGCTGATCTGAAGAAGACCTTTGTAACGACCAATAAGATTTGA 4383 0.3698 MANQQMQIINLASSSSSSSAASLKTYDVFISFRGEDTRKSFTSHLHDALNQKKIETYIDYRLEKGEEISSALIKAIEESLVSVVIFSKDYSSSKWCLDEISKIMECKKDEGQVVIPVFYEIDPSRVRKQTGTYEEAFAKHEGDLKISKERVQKWRSALTEAANLAGWDSETYRTESEFIKDIIKDIMQKLNLKCPIELKGLVGIEENYEGVQSLLEIDSSEVRMIGIWGMGGIGKTTLAIALHAKLYSKFEGHCFLTSVREQSEKYGLNVLRKKLFSELLEEENLHVDVPKLEYHFVTRRLRRKKVFIVLDDVASSKQLEDLIGDYDCLGPGSRVIVTTRDKHIFSHVDGIYEVKELNDYDSLQLFYLNAFRENHLINGYEELSKSVIAYCKGNPLALKVLGARLRSRSKEIWKSELRKLQKIPNVEIHNVLKLSFDDLDPCERDIFLDIACFFKGEYRDDVTSILEAYFYATTGIEVLIDKSLITISKRLTIEMHDLIQEMGWNIVRQESSKECGRQSRLWDPKDVYDVLKDKTGTKAIEGILLDVAKIDDLYLSSNSFIEMSNIRFLKFYYGMWSGKCKIHFPNGLDSLPNKLSYLQWHGYGLGSLPSTFCAKLLVELVMPYSNLEKLWDGVQNLVNLKEIDLRFSGNLIEVPDLSMATNLEGLSLSQCKSLRQVHPSILSLNKLQDLDLEGCTEIESLETNVHLKSLRNIRLSNCSSLKEFSVSSEELQRLWLNGTSIQKLPSSIWRCEKLGYIDLNGCDNFDSIEINKLTHDPGMRSLNTLDFSGCKELNAKNLCSILDGQQSLKLLRLENCHNLQSLPDNIGLLSSLERLTLSGSSVESLPTNIKNLLKLKELKLDNCKNLVSLPELPSSLLVLSAVNCTSLVIDFTKLQISFSLKHALRERPASVFLPGGQVPDRFSFHAEGASITIPHVPESGLCGFIYCLILSQSLPNKRYGYVACYISNYSEKISSRSTFLGDQNLISDHLFLWYYDIKTGGNGSLYKTIQKGGVWDPYNLSFEFRLEDEDGEWSTKGGIKGCGVYPIYATKHGYSSEQKGLEMDFGGSLDIVELETNSFKDIDEAQPKANGFRIEGSDHDNEDDQTKKLQEVMHQTIEIGMQDVKVDSNEKSSCHNFIVSTAGDCKRKPSSVKEENYYISSTPKNQIISFDTPSASNIDTNQIIEVSSEEKDLTNNEVDKYSESIMFEKAHSVMEIDNPHLEPNWDPIVELESMLYESYNSSLMSTHSTTISQIEDQSPKVAAILEKLETLLESSLEVISSDDEVMQQFHQVLEQFGQLEDRVPIKLHPVIYKLKAFIEGLDVGFMVAQKTIQDYDKLLQSRSLLSKQLESAKAQQDHISSKVSRGKTCLEKINSEIVELEQKLNVLVETREKLKRDLDYCDVESSKLKIQVAQWVPKCKTIIIALKNSEASYKVALTYKKKMEDEWADLKKTFVTTNKI. 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03501 1460 Gene3D - 20 189 IPR035897 -
Seca5g03501 1460 Pfam Leucine Rich Repeat 617 635 IPR011713 -
Seca5g03501 1460 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 728 IPR044974 GO:0006952
Seca5g03501 1460 FunFam Disease resistance protein RPS4 537 729 - -
Seca5g03501 1460 FunFam Disease resistance protein (TIR-NBS-LRR class) 22 192 - -
Seca5g03501 1460 ProSiteProfiles TIR domain profile. 24 190 IPR000157 GO:0007165
Seca5g03501 1460 PRINTS Disease resistance protein signature 300 314 - -
Seca5g03501 1460 PRINTS Disease resistance protein signature 705 721 - -
Seca5g03501 1460 PRINTS Disease resistance protein signature 224 239 - -
Seca5g03501 1460 PRINTS Disease resistance protein signature 391 405 - -
Seca5g03501 1460 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 167 IPR035897 -
Seca5g03501 1460 SUPERFAMILY L domain-like 495 887 - -
Seca5g03501 1460 Gene3D - 356 440 IPR042197 -
Seca5g03501 1460 Gene3D - 190 354 IPR027417 -
Seca5g03501 1460 SMART till_3 25 164 IPR000157 GO:0007165
Seca5g03501 1460 Pfam NB-ARC domain 212 424 IPR002182 GO:0043531
Seca5g03501 1460 Pfam TIR domain 26 196 IPR000157 GO:0007165
Seca5g03501 1460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 450 IPR027417 -
Seca5g03501 1460 Gene3D Ribonuclease Inhibitor 531 729 IPR032675 -
Seca5g03501 1460 Gene3D Ribonuclease Inhibitor 730 901 IPR032675 -
Seca5g03501 1460 Coils Coil 1370 1397 - -
Seca5g03501 1460 Coils Coil 1335 1355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03501 Seca-Chr5 91942005 91952505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03501 21 835 WRKY Transcription Factor Family AT4G12020 33.694 4.20e-114 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03501 - - gsj:114410062 1857.8