Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03490 ATGTCAGGTCGAGGTGGAAGGGAGCGGTTTAGGAGGGATTATCCTTCAAGATATGAAGATAATAAGGGGAATGGGGTTACTGGGCGTGGCAGTGGCAACAACAACAACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAACATTGTAGAGGATGAACTTGCTCATCATTTCTTACAGTTTGGACCGCTGGAGAGTGTCGCGTTCCAGCCTGGCCGCAGCTATGCTTTCATCAACTTCAAAAGAGATGAAGATGCCATTGATGCCATGAGGGCACTGCAAGGTTTTCCTCTTGATGGCAACCCGTTTAGAATCGAGTTTGCAAAGGCGGATAAGACATCAACAATATCACGTGATGAAGATTACTCACGGGATGAGCGAAGATCAGCATTAAGGGGATCCCCTTTCTCCCAAAGAGAGTTTAGGGGACGCCATGGTAGCCCTGAACCGCATTATTCTGACAAATCCAAGCTGAGAGATAAAAGTCCAGAGCCTAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTAAAGGTGGATGAATCAATTTTGAGAAAGGCTTTTTCTCCATTTGGTGAGATTGTGAAGATTACCACATTTCCCGGTCGTAGTTATGCCTTTGTTCGCTTTAGAACTCTGTCATCAGCAGGCAGAGCAAAAGATGCTCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAGCAGTGGGAGGAGCTCATTTAATGCCCCTCATTCCCCATTTTATAAGTCAAGTGGTCGTGATGGATCATCTGAAAACCTCAGGCAGGATAGGAACTTCAGTGGAGAACAGAACATAGGTTCCCCAAACCGATTCCTGAATTGGGATGCTAGAGATTCTGATTCTTATGATTTTAGCAGAAGGGGTTCTTCATGGGCTGGTGGAACTAACACATATGAGCAAAGGAAAGTTGGAGAGAAGGGGACTCCACTAGGATTATCAAAAGAAATCTATGGACATATAAATAGTCCATCAAGAGAAAGACATGTTCATCTGCGTGACTTTCCACATAAGTTTCCTCAAAAGGGCGCATTCTTTGAAGATATGCAGGCCTTGCCAGAAGATTTTCCCTATCAACGCGAGGCGAAAAAGCTAAAGACTGGTTCTTCTCCTCCTGAGAGAGAGCTTCCAGAGTATCCTTTCTCTGAGTTAGAAAGACAGAAACATGTTTTCCCAAGATTATTGTCTGATTTTCCCCAACGTGAGCCTCTTGATAAAAACTTTGATGCTGGAAATTTTACCTATGGACAAACACTTGATCACCCACCAAATTCACCTCTGGCTCGCTTAGATAGACATGAAGGCTGGAAACCTCATGATAGTTTCCAAATGGGTCCTGGTGCTCTGCAATCAAATTTTGTTGAGAAGAAAAGATTCACACCTGAACCTGATAATTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATAGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATCATGTTACCTGACATCTTGGATTGCACCGCAAGAACTGGTCTGGACATGCTCTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGTTGACATTGAACTCTACAATGAATTTATGCATTATCTGGAAGAAAAGCAGCGGGCTGCAGTTGCCAAGTTAGATGACAAGACCACCTTATTTCTCGTACCTCCATCGGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTGAGGTTGGAGTATCCTGGTTTTAATCAGGGTCCCATAGACATTGAAAGAGAAATGAAAAACGAAAACCCGTTGTCCTATAATGAAAATATGTTGTATCCAAAGTCATCATTTCAATCAGTACATATACCTACTTCCCAATCTATATCAGAATTGGGTAATTCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCAGATTCAGCTCGTGCTGTGGTTAGCATGTCTGAGTCTCATGATGAAAGAAGTCGTGACTATCCTCCAATCCAGTTGCGGACGTCAGGACCAAACTGGTCTTCTCACAATCTGCAGAATTTAATCTCTAATAGAACTTTACCATTGCAACCATCAAGCGGTGCTGTTGCTGAAGAGCGTCAGCCCATCATTCCAAGGGCAATGCCAGATATAAACTCAATTCAATATTCAAGTGGAATTTCTGGTAGCAACTCATCTTATCCAGATCCTTTATCAATGCCTGTGGGATCCCTGCCACCAGAACAGCTTGCACAAATAGCTGCATCCCTTCTTGAGCAGAAAAGGCAATCTGGAAGCACTTTGAATGCATCTGCATTGGGTGATCCCAGGCAGAACAGATTTGATGGGTCTGACACCTCATCCAGACCATCCCAGAAACATGCTATAGAAAATAACCTGGTGAGTTCTGAACTTTCAACGTCTCAGTTGGGCCAAATTCTACAGTTGCAAAAGCAACAACAGATGCCAAATGTGTCTCTATTATCACAGATGGTTCAAAGAGAACCACAAAGAGAGGTTGATGGAAATCAGCAATTGACAGATAGTCGCTTGCAGGAAGACGCTGAAACTGATCCTCAGAAACGTCTACAAGCAACATTACAGCTGGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2760 0.4359 MSGRGGRERFRRDYPSRYEDNKGNGVTGRGSGNNNNPPSRHLWVGNLSHNIVEDELAHHFLQFGPLESVAFQPGRSYAFINFKRDEDAIDAMRALQGFPLDGNPFRIEFAKADKTSTISRDEDYSRDERRSALRGSPFSQREFRGRHGSPEPHYSDKSKLRDKSPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRTLSSAGRAKDALKGKLFGNPRVHICFAKSETGSSSSGRSSFNAPHSPFYKSSGRDGSSENLRQDRNFSGEQNIGSPNRFLNWDARDSDSYDFSRRGSSWAGGTNTYEQRKVGEKGTPLGLSKEIYGHINSPSRERHVHLRDFPHKFPQKGAFFEDMQALPEDFPYQREAKKLKTGSSPPERELPEYPFSELERQKHVFPRLLSDFPQREPLDKNFDAGNFTYGQTLDHPPNSPLARLDRHEGWKPHDSFQMGPGALQSNFVEKKRFTPEPDNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPDILDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDVDIELYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGFNQGPIDIEREMKNENPLSYNENMLYPKSSFQSVHIPTSQSISELGNSGISNLSFLGNKFAAAPSVSDSARAVVSMSESHDERSRDYPPIQLRTSGPNWSSHNLQNLISNRTLPLQPSSGAVAEERQPIIPRAMPDINSIQYSSGISGSNSSYPDPLSMPVGSLPPEQLAQIAASLLEQKRQSGSTLNASALGDPRQNRFDGSDTSSRPSQKHAIENNLVSSELSTSQLGQILQLQKQQQMPNVSLLSQMVQREPQREVDGNQQLTDSRLQEDAETDPQKRLQATLQLAAVLLQQIQQGKGS. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03490 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 242 IPR000504 GO:0003723
Seca5g03490 919 MobiDBLite consensus disorder prediction 695 715 - -
Seca5g03490 919 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Seca5g03490 919 SMART rrm1_1 170 238 IPR000504 GO:0003723
Seca5g03490 919 SMART rrm1_1 41 108 IPR000504 GO:0003723
Seca5g03490 919 MobiDBLite consensus disorder prediction 1 39 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 758 774 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 1 19 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 797 830 - -
Seca5g03490 919 Gene3D - 21 119 IPR012677 -
Seca5g03490 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 104 IPR000504 GO:0003723
Seca5g03490 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 234 IPR000504 GO:0003723
Seca5g03490 919 MobiDBLite consensus disorder prediction 243 291 - -
Seca5g03490 919 FunFam RNA recognition motif (RRM)-containing protein 155 248 - -
Seca5g03490 919 Gene3D - 155 250 IPR012677 -
Seca5g03490 919 CDD RRM_SF 180 237 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 120 163 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 868 896 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 868 886 - -
Seca5g03490 919 SUPERFAMILY RNA-binding domain, RBD 180 270 IPR035979 GO:0003676
Seca5g03490 919 MobiDBLite consensus disorder prediction 243 293 - -
Seca5g03490 919 MobiDBLite consensus disorder prediction 758 781 - -
Seca5g03490 919 Pfam SPOC domain 487 601 IPR012921 -
Seca5g03490 919 CDD RRM_SF 42 108 - -
Seca5g03490 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Seca5g03490 919 CDD SPOC_FPA-like 492 611 - -
Seca5g03490 919 PANTHER RNA RECOGNITION MOTIF-CONTAINING 32 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03490 Seca-Chr5 91802873 91815785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03490 41 241 Eukaryotic Initiation Factors Gene Family AT4G34110 24.299 1.00e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03490 - - gmx:100811668 1337.4