LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca5g03485	ATGGATCTTGAGACTATGTATCGATCTTGTTTTGCGTCAAATTCAAATTGGTTTGTTGAAGAGATGCACAGCACAGAATGGACTAGAGAAGAGGACAAACAATTTGAAAGTGCCATTGCCAAGTTTGATAATAATACCCCCGATTTGGAAATGGTGGCAGCCATGATCCCTAGGAAAACTGTCCTTGATGTCATGAAGCACTATGAGAAATTTGTAGAAGATATGACTGATATAGAAGCAGACCGGGTTCCAATTCCTGTATATCTCACGGGGACGGTTGAGGGTCATGATGGATGCAAAAAGAGGCATGCAACTTCCATGGGTACTTCTCATCAGGACAGGAAGAATGGGGTTCCATGGACAGCAGAGGAGCACAAATGTTTTTTGGTGGGACTTGGCGAGTATGGCAAAGGGGATTGGAGAAATATTTCTCGCCATTCTGTAATCACAAAGACTCCTACCCAAGTGGCAAGCCATGCTCAAAAGTACTTTATTAGGCAAAAGCTTTCTAGAGGGAAAGATAATAAAAGGAGGTCTAGTATCCATGATATCACCACTGATAATCTTACATAA	573	0.4188	MDLETMYRSCFASNSNWFVEEMHSTEWTREEDKQFESAIAKFDNNTPDLEMVAAMIPRKTVLDVMKHYEKFVEDMTDIEADRVPIPVYLTGTVEGHDGCKKRHATSMGTSHQDRKNGVPWTAEEHKCFLVGLGEYGKGDWRNISRHSVITKTPTQVASHAQKYFIRQKLSRGKDNKRRSSIHDITTDNLT.	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca5g03485	190	CDD	SANT	26	72	IPR001005	-
	Seca5g03485	190	Gene3D	-	118	169	-	-
	Seca5g03485	190	SUPERFAMILY	Homeodomain-like	26	79	IPR009057	-
	Seca5g03485	190	FunFam	Transcription factor SRM1	19	85	-	-
	Seca5g03485	190	Pfam	Myb-like DNA-binding domain	119	164	IPR001005	-
	Seca5g03485	190	SMART	sant	116	166	IPR001005	-
	Seca5g03485	190	SMART	sant	23	74	IPR001005	-
	Seca5g03485	190	CDD	SANT	119	164	IPR001005	-
	Seca5g03485	190	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	22	187	IPR043363	-
	Seca5g03485	190	FunFam	transcription factor MYB1R1	118	169	-	-
	Seca5g03485	190	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	115	167	IPR006447	GO:0003677
	Seca5g03485	190	MobiDBLite	consensus disorder prediction	167	190	-	-
	Seca5g03485	190	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	112	168	IPR017930	-
	Seca5g03485	190	ProSiteProfiles	Myb-like domain profile.	112	164	IPR001005	-
	Seca5g03485	190	SUPERFAMILY	Homeodomain-like	114	168	IPR009057	-
	Seca5g03485	190	ProSiteProfiles	SANT domain profile.	120	168	IPR017884	-
	Seca5g03485	190	MobiDBLite	consensus disorder prediction	167	183	-	-
	Seca5g03485	190	Gene3D	-	19	85	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca5g03485	Seca-Chr5	91774248	91775877	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Seca5g03485		Myb_DNA-binding	2.7e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca5g03485	-		-	gmx:778039	246.899