Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03483 ATGGCGCATAGGTTGCTGAGGGACCACGAAGCCGACGGCTGGGAACGCTCCGACTTCCCCATCATCTGCGAATCTTGCCTCGGTGACAGCCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACTCGGCCTTTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTTTGCCTTCTAGATCTTGAGTATGGGCTGCCAGTTCAAGTCCGGGACACAGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGCAAGAATGTAAGCATGGTGCAGGCTAGAGCTGGTATAGATTATGAGTCCTCATATGGTAAAGCACGCCCAAATGATACTATTCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCGGTAACCGGGGAGCTGTCTCAACAAAATATTAAAGATCGATATTATGGGGTGAATGATCCAGTAGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTGGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATAGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTTGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCTGAGTCCGATGGCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGGTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCTCAAGATGGTCCTCCTGGTGGGCCTACTGGGTCAGGGGAGAACAAACCCAATTTGGAAAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCACCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCGCCAGTTCCCCCTTATCAACAGTATCCACCACCATACAATGCTCCAATGGCTCCATCCCAGCCACCAGCTTCAAATCATCCCTATCAACATTCTATGCAAGCAGGGTCTTCACATACAGGGCCTGGACAGGCTGGGTCTGCATCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1473 0.4698 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRKNVSMVQARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPPQQERSYYPSMDPQRMGALVPSQDGPPGGPTGSGENKPNLEKQQMQHYAHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQYPPPYNAPMAPSQPPASNHPYQHSMQAGSSHTGPGQAGSASAETGTSTSGSQQQ. 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03483 490 FunFam Zinc finger CCCH domain-containing protein 40 219 315 - -
Seca5g03483 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 307 IPR000504 GO:0003723
Seca5g03483 490 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Seca5g03483 490 MobiDBLite consensus disorder prediction 340 396 - -
Seca5g03483 490 FunFam Zinc finger CCCH domain-containing protein 4 155 214 - -
Seca5g03483 490 MobiDBLite consensus disorder prediction 432 490 - -
Seca5g03483 490 MobiDBLite consensus disorder prediction 305 327 - -
Seca5g03483 490 Gene3D - 218 316 IPR012677 -
Seca5g03483 490 SMART c3hfinal6 163 189 IPR000571 GO:0046872
Seca5g03483 490 MobiDBLite consensus disorder prediction 432 451 - -
Seca5g03483 490 Gene3D - 155 215 - -
Seca5g03483 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 294 IPR000504 GO:0003723
Seca5g03483 490 CDD RRM_RBM22 233 306 - -
Seca5g03483 490 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 382 IPR039171 GO:0003723
Seca5g03483 490 MobiDBLite consensus disorder prediction 340 358 - -
Seca5g03483 490 SUPERFAMILY RNA-binding domain, RBD 228 316 IPR035979 GO:0003676
Seca5g03483 490 MobiDBLite consensus disorder prediction 452 490 - -
Seca5g03483 490 SMART rrm1_1 235 303 IPR000504 GO:0003723
Seca5g03483 490 SUPERFAMILY CCCH zinc finger 165 188 IPR036855 GO:0046872
Seca5g03483 490 Pfam Torus domain 137 200 IPR032297 -
Seca5g03483 490 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03483 Seca-Chr5 91765030 91769720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03483 226 295 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 7.53e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03483 K12872 - gmx:100779917 814.683