Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03481 ATGGAACATAAAGTAGCAACAACAAGTGAAGGACAACCTATCAGATGTAAAGCGGCGGTTGCAAGAAGAGCCGGTGAGCCATTGGTGATGGAGGAGATCATTGTGGCGCCACCAATGCCTCGTGAGGTTCGGATTCGTATTATATGTACCTCACTCTGCCACAGCGATATCACTCTTTGGAAGATGAAGGATCCTCCTGGCTTTTTTCCGAGAATTCTGGGACATGAGGCAGTTGGGGTAGTGGAAAGTGTAGGGAAGGATGTGACTGAAGTTACAAAAGGAGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTGTAGATTGCAAATCAACCAAGAGCAACCGTTGTACTAATTTCCCTTTCAAGGTGTCACCTTGGATGCCTAGATATGGTGGTACCACTAGATTCACTGACCTAAATGGAGAGATCATATACCATTTCATGTTTGTTTCAAGTTTCAGTGAGTACACTGTGGTTGACATTGCCAATGTAACAAAGATTGACCCAGAAATTCCTCCTGACAGGGCATGTCTTCTCAGTTGTGGTGTCTCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAGATGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAACCCAGAAAAATTTGAAATTGGGAAAAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGATTGTGGGAACAAACCTATAAGCCAGGTTATAATAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCACTGGTACATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGTTGAGCCTCTGTTCTAGTGAGGTCCTTCATAATGGGAAGACCCTCATGGGATCCGTATTTGGAGGACTCAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGTTACATGGACAAGGAACTACAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGAACATCAATAAAGCTTTTGATTTATTGAGTCAAGGACAGTGTCTGCGGTGTATTGCAGGGAGATCCAGCTTTTGTTCTTCACTTACTTGTTGCTTCACCATGGAACGTAAACAAGTAGCAGCAACAACTGAAGGACAACCTATAAGATGTAAAGCGGCGGTTGCAAGAAGAGCCGGTGAACCATTGGTGATCGAGGAGATCATTGTGGCGCCACCAATGCCTCGTGAGGTTCGGATTCGTGTTATATGTACCTCCCTCTGCCACGTCGATATCACTTTTTGGAAGATGAAGGACCCTCCTGGCTTTTTCCCAAGAATTCTTGGTCATGAGTCAATCGGGGTAGTGGAAAGTGTAGGGAAGGATATAACTGAAGTTACAAAAGGTGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGAGAGTGTGTAGACTGCAAATCAACCAAGAGCAACCTTTGTTCTAATTTCCCTTTCGAGGCATCTCCGTGGTTGCCTAGACATGGTACCACTAGATTCACTGACCTAAATGGGGAGAGCATATACCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTGGATATTGCCAATGTAACAAAGATTGACCCAGAAATTCCTCCTAACAGGGCATGTCTGCTCAGTTGTGGTATAGCAGCAGGGATAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGGTCTTCAGTAGCTATTTTTGGGCTGGGATCTATTGGATTAGCGGTTGCAGAGGGAGCCAGACTCTGTGGCGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGACTTCGTCCATGCTGGAGAATGTGGGAACAAACCTGTGAGCCAGGTTATCATAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGCGTTGGTATGGCATCAATGGTCCATGAAGCATATGCTTCTTGTCGAAAGGGTTGGGGAAAAACTATTGTTTTAGGAAAGGACAAGCCAGGATCCAGTTTGAGCCTTAGTTCTAGTGAGGTCCTTCATGATGGAAAGACCCTCAAGGGAACCTTATTTGGAGGACTCAAACCTAAGTCTCATGTATCCTTTCTTCTCAAACGTTACATGGACAAGGAACTGCAGTTGGATAAATTTGTGACTGACGAGGTGCAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGACAAATGA 2361 0.4439 MEHKVATTSEGQPIRCKAAVARRAGEPLVMEEIIVAPPMPREVRIRIICTSLCHSDITLWKMKDPPGFFPRILGHEAVGVVESVGKDVTEVTKGDVVIPIFLPDCGECVDCKSTKSNRCTNFPFKVSPWMPRYGGTTRFTDLNGEIIYHFMFVSSFSEYTVVDIANVTKIDPEIPPDRACLLSCGVSTGVGAAWRTADVEPGSTVAIFGLGSVGLAVAEGARLCGATRIIGVDVNPEKFEIGKKFGLTDFVHAGDCGNKPISQVIIEITGGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGARLSLCSSEVLHNGKTLMGSVFGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKNINKAFDLLSQGQCLRCIAGRSSFCSSLTCCFTMERKQVAATTEGQPIRCKAAVARRAGEPLVIEEIIVAPPMPREVRIRVICTSLCHVDITFWKMKDPPGFFPRILGHESIGVVESVGKDITEVTKGDVVIPIFLPDCGECVDCKSTKSNLCSNFPFEASPWLPRHGTTRFTDLNGESIYHFMFVSSFSEYTVVDIANVTKIDPEIPPNRACLLSCGIAAGIGAAWRTASVEPGSSVAIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKFEIGKKFGVTDFVHAGECGNKPVSQVIIEITGGGADYCFECVGMASMVHEAYASCRKGWGKTIVLGKDKPGSSLSLSSSEVLHDGKTLKGTLFGGLKPKSHVSFLLKRYMDKELQLDKFVTDEVQFKDINKAFDLLSKGQCLRCVIWMDK. 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03481 786 Gene3D - 418 779 - -
Seca5g03481 786 SUPERFAMILY GroES-like 9 198 IPR011032 -
Seca5g03481 786 Pfam Zinc-binding dehydrogenase 611 731 IPR013149 -
Seca5g03481 786 Pfam Zinc-binding dehydrogenase 213 333 IPR013149 -
Seca5g03481 786 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 473 487 IPR002328 GO:0008270|GO:0016491
Seca5g03481 786 SUPERFAMILY GroES-like 408 594 IPR011032 -
Seca5g03481 786 FunFam Alcohol dehydrogenase 6 418 599 - -
Seca5g03481 786 Gene3D - 189 329 - -
Seca5g03481 786 Gene3D - 587 727 - -
Seca5g03481 786 Pfam Alcohol dehydrogenase GroES-like domain 440 567 IPR013154 -
Seca5g03481 786 Pfam Alcohol dehydrogenase GroES-like domain 41 169 IPR013154 -
Seca5g03481 786 SUPERFAMILY GroES-like 337 383 IPR011032 -
Seca5g03481 786 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Seca5g03481 786 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 349 IPR036291 -
Seca5g03481 786 FunFam S-(hydroxymethyl)glutathione dehydrogenase 587 727 - -
Seca5g03481 786 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 572 747 IPR036291 -
Seca5g03481 786 SUPERFAMILY GroES-like 736 783 IPR011032 -
Seca5g03481 786 FunFam Alcohol dehydrogenase 6 19 201 - -
Seca5g03481 786 Gene3D - 19 381 - -
Seca5g03481 786 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Seca5g03481 786 FunFam S-(hydroxymethyl)glutathione dehydrogenase 189 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03481 Seca-Chr5 91750673 91760248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03481 440 518 Monolignol Biosynthesis Gene Families AT4G37990 31.250 3.19e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03481 K00121 - vvi:100255814 702.975