Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca5g03465 ATGGATTCGTTTGAGGCGGATGGAAATGGGAAGGAGGAGGCATTGCCACCACCACCTCCAGTCCCTTCAGATGTTGTACCAGTCAAAGCTGAAGAGGCATTCCCTGTCCCTGCTGAACCTGTTAAGAAAAAGGTTTCCCGTCTTCCAATAGCTAGACGTGGTCTGGGATCAAAAGGATCAAAAATACCTCTTCAAACCAATCACTTCAAAGTTAATGTCACTAACAATGATGGTCATTTCTTCCATTATAGTGTGTCTTTTTGTTATGAAGATGGACGCCCTGTAGAAGGTAAAGGTGTAGGGAGAAAGATAATGGATAGGGTGCAGGAGACTTATCATTCTGACTTGAATGGTAAGGACTTTGCATATGATGGTGAGAAGAGTCTGTTTACTATTGGCTCCCTTCCTCGAAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATGTTACTTCTAACAGAAATAATGGCAATTGTAGCCCTGATGGAAATGGGGACAATGAGAGTGACAGAAAGAGGATGCGGCGACCATACCGTGCAAAGACATTTAAAGTTGAGATCAGCTATGCTGCAAAAATTCCAATGCAGGCCATTGCCAATGCCTTACGCGGGCAGGAATCTGAGAATTTCCAAGAAGCCATTAGAGTGCTTGATATCATATTGAGGCAACATGCTGCTAAGCAAGGCTGCCTACTTGTGCGCCAATCTTTCTTCCACAATGATCCGAATAACTTTGCTGATGTTGGAGGTGGTGTTCTAGGCTGCAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTCAACATAGATGTCTCAACTACCATGGTGATTCAACCTGGGCCTGTGGTGGACTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAGCTTGACTGGGCAAAGGCCAAAAGAACACTGAAAAACCTGAGGATCAAAACTCACCCATCCAATCAAGAGTTCAAAATTACTGGACTCAGTGAACTCCCATGCAAAGAACAGACTTTTACTCTAAAGAGCAAAGGAAGGGATGGTGATGATAATGCTGAGGAAGTGACTGTATATGATTATTTTGTTAATGTTCGGAAGATAGATCTCCGTTACTCTGGTGATCTTCCATGTATCAATGTTGGCAGGCCTAAACGGCCGACATATTTCCCTGTTGAGCTCTGTGAATTGGTATCCTTGCAACGATACACAAAAGCTCTGTCCACACTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAACCACAAGAGCGGATGAAAATTTTGTCTGATGCACTAAGAACCAGCAACTATGGTTCTGAACCTTTGCTTCGTAATTGTGGAATTTCTATAAGCAATGGCTTTACTCAAGTGGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTGAACCCAAGGAATGGGCGTTGGAATTTTGGCAACAAGAAATTTGTGCGGCCAACTAAGATAGAAAGATGGGCTGTGGTTAACTTCTCTGCACGCTGTGATGTACGAGGGCTTGTGAGGGATCTGACTAGAGTTGCAGATATGAAAGGAATTGCGATAGATGCCCCATTTGATGTGTTTGAAGAAAATGGTCAATTTAGGCGTGCTCCTCCTATGGTTAGAGTGGAGAAGATGTTTGAGCTCATCCAGTCTAAACTTCCTGGGGCTCCTCAGTTCCTCCTCTGCTTGATTCCTGAACGCAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTTTGGAATCGTGAATCAGTGCATGTGTCCTTTAAGGGTCAATGACAATCTTCTGACCAATGTTTTGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCATTATTAGGCGTTGAAATTTCCCCATCTCTTCCTTTTGTTTCCAAAGCTCCCACCCTCATTTTAGGCATGGATGTGTCACATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCTGCGGTGGTCAGCTCCAGAGAGTGGCCTCTAATTTCAAAATATAGAGCTTGTGTTCGTACTCAGTCTGCAAAGGTTGAAATGATAGACAATTTGTTCAAGCAAGTTTCAGAAAAGGAGGATGAAGGCATTATGAGGGAGCTTTTGATTGATTTCTATTCAAGTTCTGGGAAGAGAAAACCTGAAAATATAATCATATTCAGGGATGGTGTTAGTGAGTCACAGTTCAATCAAGTATTGAATATTGAACTTGATCAAATCATTCAGGCATGTAAATTTCTTGATGAAAAGTGGGAACCAAAATTTGTGGTAATTGTTGCTCAGAAGAACCATCACACAAGGTTCTTCCAGCCTGGATCTCCCGACAATGTCCCACCTGGTACTGTTATCGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCTCATGCTGGAATGATAGGTACCAGTAGGCCTACACACTACCATGTGCTACTGGATGAAGTTGGTTTCTCTCCTGATGAACTGCAGGAGCTTGTCCATTCTCTATCTTATGTGTATCAGAGAAGTACCACTGCAATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACTCAATTGGGGCACTTCATGAAATTTGAGGACAAATCTGAAACATCTTCAAGCCATGGTGGGCTGAGTGCTGCTGGAGCTGTTCCTGTGCCTCCCATGCCCAAATTGCAGGATAATGTCTGTAACTCAATGTTCTTTTGTTGA 2745 0.4288 MDSFEADGNGKEEALPPPPPVPSDVVPVKAEEAFPVPAEPVKKKVSRLPIARRGLGSKGSKIPLQTNHFKVNVTNNDGHFFHYSVSFCYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNGNCSPDGNGDNESDRKRMRRPYRAKTFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMVIQPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTHPSNQEFKITGLSELPCKEQTFTLKSKGRDGDDNAEEVTVYDYFVNVRKIDLRYSGDLPCINVGRPKRPTYFPVELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALRTSNYGSEPLLRNCGISISNGFTQVEGRVLPAPRLKFGNGEDLNPRNGRWNFGNKKFVRPTKIERWAVVNFSARCDVRGLVRDLTRVADMKGIAIDAPFDVFEENGQFRRAPPMVRVEKMFELIQSKLPGAPQFLLCLIPERKNCEIYGPWKKKNLADFGIVNQCMCPLRVNDNLLTNVLLKINAKLGGLNSLLGVEISPSLPFVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDEGIMRELLIDFYSSSGKRKPENIIIFRDGVSESQFNQVLNIELDQIIQACKFLDEKWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEVGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEDKSETSSSHGGLSAAGAVPVPPMPKLQDNVCNSMFFC. 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca5g03465 914 SUPERFAMILY Ribonuclease H-like 551 873 IPR012337 -
Seca5g03465 914 Gene3D - 462 628 - -
Seca5g03465 914 SMART DUF1785_2 230 282 IPR014811 -
Seca5g03465 914 Pfam Argonaute linker 2 domain 424 470 IPR032472 -
Seca5g03465 914 Gene3D - 634 914 IPR036397 GO:0003676
Seca5g03465 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 877 - -
Seca5g03465 914 Pfam N-terminal domain of argonaute 61 220 IPR032474 -
Seca5g03465 914 FunFam Protein argonaute 7 277 402 - -
Seca5g03465 914 ProSiteProfiles Piwi domain profile. 567 875 IPR003165 GO:0003676
Seca5g03465 914 SMART Piwi_a_2 567 875 IPR003165 GO:0003676
Seca5g03465 914 MobiDBLite consensus disorder prediction 153 174 - -
Seca5g03465 914 FunFam Protein argonaute 3 635 914 - -
Seca5g03465 914 Pfam Mid domain of argonaute 477 529 IPR032473 -
Seca5g03465 914 Pfam Piwi domain 568 875 IPR003165 GO:0003676
Seca5g03465 914 CDD Piwi_ago-like 442 869 IPR045246 -
Seca5g03465 914 Pfam Argonaute linker 1 domain 232 280 IPR014811 -
Seca5g03465 914 CDD PAZ_argonaute_like 282 397 - -
Seca5g03465 914 MobiDBLite consensus disorder prediction 1 25 - -
Seca5g03465 914 Gene3D paz domain 276 402 - -
Seca5g03465 914 SUPERFAMILY PAZ domain 277 438 IPR036085 GO:0005515
Seca5g03465 914 ProSiteProfiles PAZ domain profile. 324 398 IPR003100 GO:0005515
Seca5g03465 914 Pfam PAZ domain 286 414 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca5g03465 Seca-Chr5 91412364 91420916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca5g03465 52 914 Eukaryotic Initiation Factors Gene Family AT5G43810 35.412 9.82e-169 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca5g03465 K11593 - gmx:100820376 1652.88